Table 2 Analysis of RNA editing sites and types in the F. suspensa mitochondrial genome
From: Assembly and analysis of the complete mitochondrial genome of Forsythia suspensa (Thunb.) Vahl
Type of edit | RNA editing | Number | Percentage |
|---|---|---|---|
Hydrophilic-hydrophilic | CAC (H) = > TAC (Y) | 6 |  |
|  | CAT (H) = > TAT (Y) | 15 |  |
|  | CGC (R) = > TGC (C) | 7 |  |
|  | CGT (R) = > TGT (C) | 29 |  |
| Â | total | 57 | 12.39% |
Hydrophilic-hydrophobic | ACA (T) = > ATA (I) | 3 |  |
|  | ACC (T) = > ATC (I) | 1 |  |
|  | ACG (T) = > ATG (M) | 3 |  |
|  | ACT (T) = > ATT (I) | 3 |  |
|  | CGG (R) = > TGG (W) | 28 |  |
|  | TCA (S) = > TTA (L) | 72 |  |
|  | TCC (S) = > TTC (F) | 31 |  |
|  | TCG (S) = > TTG (L) | 38 |  |
|  | TCT (S) = > TTT (F) | 38 |  |
| Â | total | 217 | 47.17% |
Hydrophilic-stop | CAA (Q) = > TAA (X) | 1 |  |
|  | CGA (R) = > TGA (X) | 1 |  |
| Â | total | 2 | 0.43% |
Hydrophobic-hydrophilic | CCA (P) = > TCA (S) | 6 |  |
|  | CCC (P) = > TCC (S) | 6 |  |
|  | CCG (P) = > TCG (S) | 3 |  |
|  | CCT (P) = > TCT (S) | 20 |  |
| Â | total | 35 | 7.61% |
Hydrophobic-hydrophobic | CCA (P) = > CTA (L) | 44 |  |
|  | CCC (P) = > CTC (L) | 9 |  |
|  | CCC (P) = > TTC (F) | 6 |  |
|  | CCG (P) = > CTG (L) | 31 |  |
|  | CCT (P) = > CTT (L) | 20 |  |
|  | CCT (P) = > TTT (F) | 14 |  |
|  | CTC (L) = > TTC (F) | 4 |  |
|  | CTT (L) = > TTT (F) | 10 |  |
|  | GCC (A) = > GTC (V) | 2 |  |
|  | GCG (A) = > GTG (V) | 7 |  |
|  | GCT (A) = > GTT (V) | 2 |  |
| Â | total | 149 | 32.39% |