Table 3 Analysis of homologous fragments of the F.suspensa chloroplast and mitochondrial genomes
From: Assembly and analysis of the complete mitochondrial genome of Forsythia suspensa (Thunb.) Vahl
No. | Length(bp) | Number of mism-atches | Num-ber of gap open-ings | Cp start | Cp end | Mt start | Mt end | Genes (cp.) | Genes (mt) |
|---|---|---|---|---|---|---|---|---|---|
1 | 3704 | 0 | 1 | 105,768 | 109,471 | 163,780 | 160,078 | trnI-GAU (partical:22.57%); trnA-UGC; rrn23 (partical:84.23%) | trnA-TGC |
134,093 | 137,796 | 160,078 | 163,780 | ||||||
2 | 3179 | 0 | 2 | 34,479 | 37,657 | 490,717 | 493,893 | psbD; psbC | Â |
3 | 2431 | 3 | 0 | 147,015 | 149,445 | 240,258 | 237,828 | ycf15; ycf2 (partical:29.92%) | Â |
94,119 | 96,549 | 237,828 | 240,258 | ||||||
4 | 1730 | 26 | 12 | 13,523 | 15,249 | 195,898 | 197,601 | atpF (partical:40.56%); atpH | Â |
5 | 1662 | 25 | 9 | 22,086 | 23,738 | 530,312 | 531,943 | rpoC1 (partical:58.58%) | Â |
6 | 1406 | 0 | 0 | 143,959 | 145,364 | 222,781 | 221,376 | ndhB (partical:63.56%) | Â |
98,200 | 99,605 | 221,376 | 222,781 | ||||||
7 | 735 | 11 | 4 | 80,291 | 81,024 | 472,900 | 473,621 | petD (partical:46.49%) | Â |
8 | 1005 | 108 | 25 | 47,478 | 48,474 | 146,737 | 147,705 | trnS-GGA; rps4 (partical:80.53%) | trnS-GGA |
9 | 1365 | 187 | 46 | 51,487 | 52,821 | 412,184 | 413,485 | ndhJ (partical:71.70%); ndhK; ndhC (partical:42.70%) | Â |
10 | 433 | 11 | 2 | 16,887 | 17,318 | 286,972 | 286,547 | rps2 (partical:60.76%) | Â |
11 | 676 | 55 | 20 | 66,987 | 67,651 | 89,732 | 89,092 | psbJ; psbL; psbF; psbE (partical:45.24%) | Â |
12 | 349 | 1 | 0 | 76,781 | 77,129 | 340,188 | 340,536 | psbB (partical:22.86%) | Â |
13 | 389 | 14 | 5 | 96,438 | 96,810 | 358,600 | 358,212 | ycf15 (partical:35.86%) | Â |
146,754 | 147,126 | 358,212 | 358,600 | ||||||
14 | 674 | 71 | 25 | 69,221 | 69,878 | 231,054 | 230,418 | petG; trnW-CCA; trnP-UGG | trnW-CCA |
15 | 885 | 186 | 37 | 103,403 | 104,266 | 305,615 | 304,757 | rrn16 (partical:57.99%) | rrn18 (partical:44.39%) |
139,298 | 140,161 | 304,757 | 305,615 | ||||||
16 | 149 | 2 | 0 | 145,776 | 145,924 | 240,392 | 240,244 | ndhB (partical:6.74%) | Â |
97,640 | 97,788 | 240,244 | 240,392 | ||||||
17 | 163 | 15 | 2 | 32,451 | 32,611 | 146,276 | 146,114 | trnD-GUC | trnD-GTC |
18 | 90 | 2 | 1 | 105,634 | 105,723 | 465,356 | 465,269 | trnI-GAU (partical:8.83%) | Â |
137,841 | 137,930 | 465,269 | 465,356 | ||||||
19 | 85 | 3 | 1 | 111,380 | 111,463 | 6992 | 6908 | trnN-GUU | trnN-GTT |
132,101 | 132,184 | 6908 | 6992 | ||||||
20 | 80 | 5 | 0 | 54,948 | 55,027 | 268,269 | 268,348 | trnM-CAU | trnM-CAT |
21 | 47 | 0 | 0 | 58,618 | 58,664 | 340,860 | 340,814 | rbcL (partical:3.28%) | Â |
22 | 32 | 0 | 0 | 114,267 | 114,298 | 91,814 | 91,845 | ndhF (partical:1.44%) | Â |
23 | 90 | 16 | 3 | 9316 | 9404 | 146,933 | 146,846 | trnS-GCU | trnS-GGA |
24 | 31 | 0 | 0 | 90,116 | 90,146 | 480,491 | 480,461 | ycf2 (partical:0.45%) | Â |
153,418 | 153,448 | 480,461 | 480,491 | ||||||
25 | 30 | 0 | 0 | 103,391 | 103,420 | 317,854 | 317,825 | rrn16 (partical:2.01%) | Â |
140,144 | 140,173 | 317,825 | 317,854 |