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Table 1 Total number of sc-DGE results with different corrections and the comparison to the uncorrected results

From: FastCAR: fast correction for ambient RNA to facilitate differential gene expression analysis in single-cell RNA-sequencing datasets

 

Uncorrected

FastCAR

CellBender

SoupX

Total significant

5067

4909

5355

5040

Overlap uncorrected

5067

4695

2762

4787

n removed after correction

 

372

2305

280

New after correction

 

214

2593

253

Direction switch after correction

 

0

1

0