Table 3 Log2 fold change (log2FC) and adjusted p-value (padj) of the expression analysis for all BvNLP7 genes. A positive value for the log2FC indicates higher expression in tolerant genotypes. The comparison ‘all tolerant vs. all susceptible’ involves all samples, inoculated and not inoculated, stratified by the tolerant vs. susceptible genotypes
From: Genomic characterization of a nematode tolerance locus in sugar beet
Short name | U2BvONT gene identifier | Log2FC | Padj | Comparison |
|---|---|---|---|---|
NLP7-T1 | Bv05_g11459_hany | 2.97 | 2.5e-10 | inoculated tolerant line BR12 vs. inoculated susceptible line SUS3 |
NLP7-T2 | Bv05_g11464_mdsr | 2.99 | 2.4e-12 | inoculated tolerant line BR12 vs. inoculated susceptible line SUS3 |
NLP7-T3 | Bv05_g11461_tlqs | 0.82 | 0.027 | inoculated tolerant line BR12 vs. inoculated susceptible line SUS3 |
NLP7 -T4 | Bv05_g11465_rycp | 1.03 | 6.4e-05 | inoculated tolerant line BR12 vs. inoculated susceptible line SUS3 |
NLP7-T1 | Bv05_g11459_hany | 1.93 | 7.8e-06 | inoculated tolerant line Strube U2Bv vs. inoculated susceptible line U1Bv |
NLP7-T2 | Bv05_g11464_mdsr | 1.29 | 5.3e-04 | inoculated tolerant line Strube U2Bv vs. inoculated susceptible line U1Bv |
NLP7-T1 | Bv05_g11459_hany | 2.34 | 6.5e-27 | all tolerant vs. all susceptible |
NLP7-T2 | Bv05_g11464_mdsr | 1.71 | 2.2e-13 | all tolerant vs. all susceptible |