Table 1 Annotated genes in the Prunus Cistena CP genomes

Photosynthesis

Subunits of photosystem I

psaA, psaB, psaC, psaI, psaJ

Subunits of photosystem II

psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ

Subunits of NADH dehydrogenase

ndhA^a, ndhB^a(2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK

Subunits of cytochrome b/f complex

petA, petB^a, petD^a, petG, petL, petN

Subunits of ATP synthase

atpA, atpB, atpE, atpF^a, atpH, atpI

Large subunit of rubisco

rbcL

Self-replication

Proteins of large ribosomal subunit

rpl14, rpl16^a, rpl2^a(2), rpl20, rpl22, rpl23(2), rpl32, rpl33, rpl36

Proteins of small ribosomal subunit

rps11, rps12^b(2), rps14, rps15, rps16^a, rps18, rps19, rps2, rps3, rps4, rps7(2), rps8

Subunits of RNA polymerase

rpoA, rpoB, rpoC1^a, rpoC2

Ribosomal RNAs

rrn16(2), rrn23(2), rrn4.5(2), rrn5(2)

Transfer RNAs

trnA-UGC^a(2), trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-GCC, trnG-GCC^a, trnH-GUG, trnI-CAU(2), trnI-GAU^a(2), trnK-UUU^a, trnL-CAA(2), trnL-UAA^a, trnL-UAG, trnM-CAU, trnN-GUU(2), trnP-UGG, trnQ-UUG, trnR-ACG(2), trnR-UCU, trnS-GCU(2), trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC(2), trnV-UAC^a, trnW-CCA, trnY-GUA, trnfM-CAU

Other genes

Maturase

matK

Protease

clpP^b

Envelope membrane protein

cemA

Acetyl-CoA carboxylase

accD

c-type cytochrome synthesis gene

ccsA

Genes of unknown function

Conserved hypothetical chloroplast ORF

ycf1(2), ycf2(2), ycf3^b, ycf4