Fig. 3

Genome-wide distribution of selection signatures identified in Yunnan indigenous pigs via XP-EHH method. a Circle Manhattan plot of significant SNPs on the whole genome. The rings from inner to outsider showed results of BS, DNXE, GLGS, and SB. The black dashed lines represent a 99.5% threshold value. The genes were breed-sharing in Yunnan indigenous pigs. b-c Venn diagram about the candidate SNPs detected in Yunnan indigenous pigs and WBA samples. BS, Baoshan pigs; DNXE, Diannanxiaoer pigs; GLGS, Gaoligongshan pigs; SB, Saba pigs; WBA, Asian wild boars