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Table 2 Comparison of ATPases identified by searching translated genomes with the two-motif method and the expanded two-motif method. The inventory of the respective species and the number of exons in which the query sequence is present

From: A two-sequence motif-based method for the inventory of gene families in fragmented and poorly annotated genome sequences

 

Inventory

One exon

Two exons

Three exons

Two-motif

Expanded two-motif

P1B

 A. thaliana

8

4

3

1

4

6

 H. vulgare

10

5

3

1

5

7

 O. sativa

9

4

4

1

4

8

P2A

 A. thaliana

4

3

1

0

10

10

 H. vulgare

3

2

1

0

9

9

 O. sativa

3

2

1

0

10

10

P2B

 A. thaliana

10

7

0

3

10

11

 H. vulgare

10

7

0

4

9

9

 O. sativa

11

8

0

3

10

11

P3A

 A. thaliana

11

8

3

0

8

11

 H. vulgare

9

5

4

0

5

9

 O. sativa

10

5

5

0

5

10

P4

 A. thaliana

12

10

0

2

10

10

 H. vulgare

10

7

0

3

6

6

 O. sativa

10

7

0

3

7

7

P5

 A. thaliana

1

0

1

0

0

1

 H. vulgare

1

0

1

0

1

1

 O. sativa

1

0

1

0

0

1