Table 1 Gene classification table
Group of genes | Gene name | Length | Start codon | Stop codon | Amino acid |
|---|---|---|---|---|---|
ATP synthase | atp1 | 1518 | ATG | TAA | 506 |
atp4 | 588 | ATG | TAA | 196 | |
atp6 | 663 | ATG | CAA (TAA) | 221 | |
atp8 | 483 | ATG | TAA | 161 | |
atp9 | 225 | ATG | TAA | 75 | |
Cytochrome c biogenesis | ccmB | 621 | ATG | TGA | 207 |
ccmC | 747 | ATG | TGA | 249 | |
ccmFC* | 1431 | ATG | TAG | 477 | |
ccmFN | 1728 | ATG | TGA | 576 | |
Ubichinol cytochrome c reductase | cob | 1179 | ATG | TGA | 393 |
Cytochrome c oxidase | cox1 | 1584 | ATG | TAA | 528 |
cox2 | 906 | ATG | TAA | 302 | |
cox3 | 798 | ATG | TGA | 266 | |
Maturases | matR | 1986 | ATG | TAG | 662 |
Transport membrane protein | mttB | 312 | ATG | TGA | 104 |
NADH dehydrogenase | nad1**** | 978 | ACG (ATG) | TAA | 326 |
nad2**** | 1467 | ATG | TAA | 489 | |
nad3 | 357 | ATG | TAA | 119 | |
nad4*** | 1488 | ATG | TGA | 496 | |
nad4L | 303 | ACG (ATG) | TAA | 101 | |
nad5**** | 2010 | ATG | TAA | 670 | |
nad6 | 618 | ATG | TAA | 206 | |
nad7**** | 1185 | ATG | TAG | 395 | |
nad9 | 591 | ATG | TAA | 197 | |
Large subunit ribosomal proteins (LSU) | rpl16 | 558 | ATG | TAA | 186 |
rpl5 | 564 | ATG | TAA | 188 | |
Small subunit ribosomal proteins (SSU) | rps10* | 411 | ATG | TAA | 137 |
rps12 | 372 | ATG | TGA | 124 | |
rps14 | 303 | ATG | TAG | 101 | |
rps19 | 138 | ATG | TGA | 46 | |
rps3* | 1677 | ATG | TAA | 559 | |
rps4 | 1050 | ATG | TAA | 350 | |
rps7* | 276 | ATG | TAA | 92 | |
Ribosomal RNAs | rrn18 | 2008 | Â | Â | Â |
rrn26(2) | (3137,3137) | Â | Â | Â | |
rrn5 | 115 | Â | Â | Â | |
Transfer RNAs | trnC-GCA | 71 | Â | Â | Â |
trnD-GTC | 74 | Â | Â | Â | |
trnE-TTC | 72 | Â | Â | Â | |
trnF-GAA(2) | (64,74) | Â | Â | Â | |
trnG-GCC(2) | (72,72) | Â | Â | Â | |
trnH-GTG | 74 | Â | Â | Â | |
trnK-TTT | 73 | Â | Â | Â | |
trnL-CAA | 82 | Â | Â | Â | |
trnM-CAT(4) | (73,74,74,74) | Â | Â | Â | |
trnN-GTT | 72 | Â | Â | Â | |
trnP-CGG* | 83 | Â | Â | Â | |
trnP-TGG | 75 | Â | Â | Â | |
trnQ-TTG | 72 | Â | Â | Â | |
trnT-TGT* | 75 | Â | Â | Â | |
trnW-CCA | 74 | Â | Â | Â | |
trnY-GTA | 83 | Â | Â | Â | |
Pseudo gene | rps1 | 514 | ATG | – | 171 |