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Table1 Encoding representation of DNA sequences

From: Time series-based hybrid ensemble learning model with multivariate multidimensional feature coding for DNA methylation prediction

Symbol

Abbreviation

Description

Code 1

Spectral encoding

Spectral time sequence

Code 2

CGR encoding

CGR time sequence

Code 3

Z encoding

Z time sequence

Code 4

Time sequence encoding

Spectral time sequence + CGR time sequence + Z time sequence

Code 5

BPF encoding

Binary encoding of Position Feature

Code 6

NCP encoding

Coding of Nucleic acid chemical properties

Code 7

DPCP encoding

Coding of Dinucleotide physical and chemical properties

Code 8

Gene feature encoding

Binary encoding of Position Feature + Nucleic acid chemical properties + Coding of Dinucleotide physical and chemical properties

Code 9

Multidimensional and multivariate hybrid encoding

Hybrid Time sequence encoding and Gene feature encoding