Table 2 Genome features of the four sequenced Citrobacter species
Strain | Assembly size (bp) | Contigs | G + C content | N50 | CDS | ANI (%) | PubMLST species ID | ARGs No. | VGs No. | Insertion Sequence | Trans-poson | T4CP gene cluster | T4SS secretion system | Plasmid ID and [Type] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
S21 | 4 987 947 | 144 | 52.12 | 60,775 | 4923 | C. braakii (98.6) * | C. braakii | 25 | 56 | IS5 IS102 IS5075 | Tn5403 | - | VirB1, VirB2, VirB3, VirB4, VirB5, VirB6, VirB8, VirB9, VirB10, VirB11, VirD4 | AA885 [rep_1804] |
S23 | 4 805 424 | 62 | 52.17 | 145,585 | 4602 | C. braakii (98.7) * | C. braakii | 24 | 55 | - | - | Present | - | - |
S24 | 5 481 339 | 104 | 50.62 | 192,439 | 5492 | C. murliniae (99.26) ** | C. murliniae | 24 | 47 | ISEsa1 ISEsa2 ISKpn24 ISKpn26 IS5075 ISEc33 | Tn5403 | Present | VirD4-TraABCD TraEFGH-TrbABCD TrbEFGH TrbIJKLV% TraX_F-TrbBCDE TrbFGHIJLN%% | AA543 [IncHI1A, IncP] AA810 [rep_cluster_1368] AC978 [-] AC431 [-] |
S25 | 5 269 614 | 91 | 51.49 | 154,085 | 5352 | C. portucalensis (98.6) *** | C. portucalensis | 24 | 38 | ISSpu2 ISEsa1 ISEsa2 IS903 IS5075 ISKox1 | Tn5403 | Present | TraABCEFG TraHIKLNVW# | AB130 [Col(VCM04)] AA423 [-] AF384 [-] AF578 [-] |