Fig. 1
From: Irreproducible results and unsupported conclusions in Ahmad et al. [BMC genomics (2020) 21:656]
Coverage across two genes in 0B and 1B gDNA libraries of A. correntinus. We include here the results using Bowtie2 and SSAHA2 mappings for the tars (a) and ipo11 (b) genes using the NCBI contigs as a reference. Note that, in general, coverage is 0 with Bowtie2 for the shortest exons due to not considering partially mapped reads as SSAHA2 does. By comparing the y-axis scales of both graphs within each gene, note how SSAHA2 detected about twice number of copies as Bowtie2. See fold change (1B/0B) values in our Supplementary_File_1, and coverage graphics for all genes in Supplementary_Files 2 and 3, which include the collections of 26 NCBI and the 61 EBI contigs, respectively