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Table 2 Detailed information on SNPs used in MR analyses

From: Investigating the causal impact of gut microbiota on glioblastoma: a bidirectional Mendelian randomization study

Bacterial taxa

SNP

Effect allele

Other allele

F

palindromic

exposure

outcome

Beta

SE

pval

Beta

SE

pval

Genus Eubacteriumbrachygroup(id.11296)

rs12151423

A

G

19.869

FALSE

0.101

0.023

8.29E-06

0.163

0.149

0.272

rs13139592

T

C

19.910

FALSE

-0.146

0.033

8.12E-06

0.099

0.221

0.653

rs1384962

A

G

20.613

FALSE

0.121

0.027

5.62E-06

0.236

0.161

0.142

rs2913110

C

T

21.004

FALSE

0.105

0.023

4.58E-06

0.070

0.156

0.654

rs4862235

G

A

21.553

FALSE

0.105

0.023

3.44E-06

0.194

0.150

0.195

rs55932844

A

G

22.357

FALSE

-0.171

0.036

2.26E-06

-0.247

0.266

0.352

rs62348779

T

C

21.666

FALSE

-0.201

0.043

3.25E-06

-0.581

0.281

0.039

rs6591893

G

A

20.281

FALSE

0.108

0.024

6.69E-06

-0.007

0.157

0.967

rs720439

A

G

19.845

FALSE

-0.112

0.025

8.40E-06

-0.212

0.173

0.221

rs73199919

T

C

19.848

FALSE

-0.237

0.053

8.38E-06

0.357

0.349

0.307

rs9613196

T

A

20.398

TRUE

-0.239

0.053

6.29E-06

-0.474

0.379

0.212

Genus Faecalibacterium(id.2057)

rs10927394

G

T

20.549

FALSE

-0.232

0.051

5.81E-06

-0.451

0.538

0.402

rs114946999

C

T

20.649

FALSE

-0.086

0.019

5.52E-06

-0.152

0.224

0.499

rs11776390

T

C

20.793

FALSE

-0.078

0.017

5.12E-06

0.191

0.302

0.527

rs12320842

C

G

33.453

TRUE

0.095

0.016

7.30E-09

-0.018

0.217

0.933

rs1271565

C

T

23.195

FALSE

-0.058

0.012

1.46E-06

0.217

0.170

0.200

rs12753492

A

C

18.295

FALSE

0.064

0.015

1.89E-05

-0.271

0.235

0.248

rs2835874

T

C

19.440

FALSE

-0.087

0.020

1.04E-05

0.018

0.390

0.963

rs28376661

C

G

21.305

TRUE

0.050

0.011

3.92E-06

-0.100

0.162

0.538

rs61875484

C

G

19.828

TRUE

0.082

0.018

8.47E-06

-0.434

0.255

0.089

rs6910935

A

G

23.699

FALSE

0.135

0.028

1.13E-06

-0.492

0.310

0.112

rs75499067

C

T

23.900

FALSE

0.228

0.047

1.01E-06

-0.340

0.284

0.231

rs79656633

T

C

20.326

FALSE

0.146

0.032

6.53E-06

-0.582

0.249

0.019

rs9536330

T

C

20.026

FALSE

-0.048

0.011

7.64E-06

0.092

0.149

0.537

Genus Prevotella7(id.11182)

rs11035469

A

G

21.365

FALSE

-0.144

0.031

3.80E-06

0.231

0.176

0.188

rs118038478

A

G

19.239

FALSE

0.206

0.047

1.15E-05

-0.403

0.291

0.166

rs12124567

A

G

19.448

FALSE

-0.121

0.028

1.03E-05

-0.022

0.187

0.905

rs12195431

T

C

19.741

FALSE

0.197

0.044

8.87E-06

-0.022

0.255

0.931

rs16937247

G

C

17.273

TRUE

0.146

0.035

3.24E-05

-0.008

0.188

0.966

rs2240542

C

T

21.312

FALSE

0.121

0.026

3.90E-06

-0.185

0.169

0.271

rs2918132

C

T

20.228

FALSE

-0.115

0.025

6.88E-06

0.340

0.155

0.028

rs385483

A

G

22.038

FALSE

0.137

0.029

2.67E-06

-0.272

0.184

0.139

rs57404562

C

A

24.202

FALSE

0.155

0.032

8.67E-07

-0.049

0.220

0.826

rs9426434

T

C

19.713

FALSE

-0.124

0.028

9.00E-06

0.019

0.157

0.903

rs9608249

A

G

22.130

FALSE

-0.158

0.034

2.55E-06

0.162

0.233

0.486

rs9959718

G

A

23.333

FALSE

0.133

0.028

1.36E-06

-0.179

0.184

0.330

Family Ruminococcaceae(id.2050)

rs10093275

C

T

20.960

FALSE

0.053

0.012

4.69E-06

-0.038

0.158

0.809

rs10166469

T

C

19.686

FALSE

-0.053

0.012

9.12E-06

0.086

0.170

0.612

rs117677831

G

A

27.172

FALSE

0.098

0.019

1.86E-07

-0.049

0.268

0.856

rs1612733

T

C

20.862

FALSE

0.109

0.024

4.94E-06

-0.722

0.329

0.028

rs17376049

T

C

24.306

FALSE

0.085

0.017

8.22E-07

-0.525

0.236

0.026

rs2113833

T

C

22.701

FALSE

0.169

0.036

1.89E-06

-0.345

0.415

0.405

rs2426816

T

A

20.514

TRUE

-0.048

0.011

5.92E-06

0.104

0.149

0.483

rs3009418

C

A

19.489

FALSE

0.093

0.021

1.01E-05

-0.080

0.354

0.822

rs499272

G

C

19.382

TRUE

0.071

0.016

1.07E-05

0.198

0.224

0.377

rs56199908

T

C

23.584

FALSE

-0.199

0.041

1.20E-06

0.730

0.331

0.027

rs76724913

T

G

19.682

FALSE

0.090

0.020

9.15E-06

-0.517

0.254

0.042

Genus Anaerostipes(id.1991)

rs10502061

A

G

18.944

FALSE

0.084

0.019

1.35E-05

-0.059

0.233

0.800

rs13376554

A

T

18.522

TRUE

0.197

0.046

1.68E-05

-0.360

0.472

0.445

rs2014785

T

C

21.125

FALSE

0.052

0.011

4.30E-06

-0.221

0.152

0.145

rs2396460

T

C

21.897

FALSE

-0.051

0.011

2.88E-06

0.131

0.150

0.382

rs2804244

A

G

22.882

FALSE

-0.053

0.011

1.72E-06

0.171

0.153

0.262

rs3900776

G

A

21.675

FALSE

-0.110

0.024

3.23E-06

-0.280

0.443

0.528

rs60983350

G

A

21.449

FALSE

-0.054

0.012

3.63E-06

0.048

0.161

0.766

rs62157625

T

C

22.787

FALSE

0.089

0.019

1.81E-06

-0.079

0.227

0.727

rs62215703

G

A

22.260

FALSE

0.064

0.014

2.38E-06

-0.069

0.181

0.704

rs6474958

A

G

19.935

FALSE

-0.050

0.011

8.01E-06

0.167

0.160

0.295

rs6726833

C

A

21.463

FALSE

-0.088

0.019

3.61E-06

0.711

0.276

0.010

rs6854026

T

C

21.732

FALSE

-0.051

0.011

3.14E-06

0.081

0.150

0.588

rs7193624

C

T

24.803

FALSE

0.075

0.015

6.35E-07

0.126

0.269

0.641

rs7823228

G

C

20.669

TRUE

-0.062

0.014

5.46E-06

0.242

0.199

0.224

rs78735375

A

C

20.262

FALSE

-0.137

0.031

6.75E-06

-0.049

0.380

0.898

  1. SNP Single nucleotide polymorphism, SE Standard error