Fig. 5

A Exploratory PCA of time course data. Although our samples did not form clear clusters, there are definitive patterns. The 24h, 48h, and 96h L. daturaphila-induced samples cluster in the top right, whereas the controls for these time points cluster with the 0h samples in the top left. Ranges for 0h and 12h samples do not overlap at all, suggesting that there may also be circadian cycles occurring. B, C Cluster plots showing the two largest gene clusters with similar expression patterns. These are the only gene clusters that showed a clear separation between treatments throughout the experiment time. Extended gene cluster results are shown in Fig. S3