Table 2 Quality metrics of transcripts
Sample | Raw reads | Clean reads | Clean bases | Q20 (%) | Q30 (%) | GC (%) | N (ppm) |
|---|---|---|---|---|---|---|---|
LY-H1 | 42,072,616 | 41,922,716 | 6,237,389,514 | 97.60 | 93.34 | 49.20 | 4.65 |
LY-H2 | 39,739,476 | 39,595,258 | 5,884,694,753 | 97.81 | 93.82 | 50.81 | 4.69 |
LY-H3 | 40,472,092 | 40,290,928 | 5,989,704,692 | 97.30 | 92.74 | 49.87 | 5.68 |
LY-H4 | 46,677,586 | 46,512,088 | 6,918,963,075 | 97.65 | 93.44 | 49.53 | 6.97 |
HY-H1 | 50,886,106 | 50,699,212 | 7,538,118,641 | 97.53 | 93.29 | 51.30 | 4.64 |
HY-H2 | 44,681,150 | 44,564,184 | 6,631,653,990 | 97.73 | 93.55 | 50.65 | 7.24 |
HY-H3 | 43,872,014 | 43,736,682 | 6,503,963,076 | 97.74 | 93.62 | 50.00 | 5.79 |
HY-H4 | 41,897,238 | 41,767,616 | 6,215,250,424 | 97.67 | 93.46 | 49.68 | 4.67 |
LY-P1 | 41,783,508 | 41,626,586 | 6,193,266,068 | 97.63 | 93.51 | 50.11 | 4.54 |
LY-P2 | 42,456,388 | 42,255,300 | 6,278,301,281 | 97.18 | 92.54 | 49.81 | 6.91 |
LY-P3 | 40,732,838 | 40,585,448 | 6,037,953,383 | 97.83 | 93.99 | 50.49 | 4.72 |
LY-P4 | 41,737,220 | 41,598,832 | 6,187,567,990 | 97.65 | 93.51 | 49.88 | 4.76 |
HY-P1 | 45,547,430 | 45,354,578 | 6,741,697,201 | 97.45 | 93.17 | 51.52 | 4.70 |
HY-P2 | 43,867,158 | 43,711,718 | 6,501,101,496 | 97.60 | 93.41 | 50.08 | 4.73 |
HY-P3 | 45,297,464 | 45,166,294 | 6,720,396,746 | 97.70 | 93.52 | 49.52 | 4.64 |
HY-P4 | 40,795,166 | 40,658,890 | 6,043,789,907 | 97.61 | 93.39 | 50.18 | 5.69 |