Table 3 Summary of trimming and read mapping results
Sample | Total reads | Total mapped | Uniquely mapped | Multiple mapped |
|---|---|---|---|---|
LY-H1 | 41,922,716 | 36,926,924 (88.08%) | 35,551,390 (84.80%) | 1,375,534 (3.28%) |
LY-H2 | 39,595,258 | 35,229,068 (88.97%) | 32,886,325 (83.06%) | 2,342,743 (5.92%) |
LY-H3 | 40,290,928 | 35,606,256 (88.37%) | 33,531,832 (83.22%) | 2,074,424 (5.15%) |
LY-H4 | 46,512,088 | 41,565,115 (89.36%) | 39,865,473 (85.71%) | 1,699,642 (3.65%) |
HY-H1 | 50,699,212 | 44,787,261 (88.33%) | 42,808,891 (84.44%) | 1,978,370 (3.90%) |
HY-H2 | 44,564,184 | 39,969,715 (89.69%) | 38,478,029 (86.34%) | 1,491,686 (3.35%) |
HY-H3 | 43,736,682 | 39,266,122 (88.78%) | 37,694,238 (86.18%) | 1,571,884 (3.59%) |
HY-H4 | 41,767,616 | 37,519,023 (89.83%) | 36,052,116 (86.32%) | 1,466,907 (3.51%) |
LY-P1 | 41,626,586 | 36,805,422 (88.41%) | 35,282,184 (84.76%) | 1,523,238 (3.66%) |
LY-P2 | 42,255,300 | 36,751,239 (86.97%) | 34,866,620 (82.51%) | 1,884,619 (4.46%) |
LY-P3 | 40,585,448 | 36,039,552 (88.80%) | 34,563,939 (85.16%) | 1,475,613 (3.64%) |
LY-P4 | 41,598,832 | 37,237,663 (89.52%) | 35,708,403 (85.84%) | 1,529,260 (3.68%) |
HY-P1 | 45,354,578 | 39,353,441 (86.77%) | 37,548,846 (82.79%) | 1,804,595 (3.98%) |
HY-P2 | 43,711,718 | 38,673,900 (88.47%) | 36,969,638 (84.58%) | 1,704,262 (3.90%) |
HY-P3 | 45,166,294 | 40,695,963 (90.10%) | 39,014,043 (86.38%) | 1,681,920 (3.72%) |
HY-P4 | 40,658,890 | 36,305,854 (89.29%) | 34,837,942 (85.68%) | 1,467,912 (3.61%) |