Table 5 Prediction information of candidate gene
From: Genome-wide association study for stalk lodging resistance related traits in maize (Zea mays L.)
Trait | Marker | marker_Rsq | Chr | Pos | p | Phenotypic variation explanation rate% | Gene accession number | Analysis model | Gene annotation |
|---|---|---|---|---|---|---|---|---|---|
RPR2 | 1_51729873 | 0.0719 | 1 | 51729873 | 6.17E-07 | 7.19 | Zm00001d028924,Zm00001d028925 | GLM | NifU-like protein 1 chloroplastic;Uncharacterized protein |
RPR2 | 2_33979628 | 0.08478 | 2 | 33979628 | 5.66E-07 | 8.48 | Zm00001d003157 | GLM | S-adenosylmethionine decarboxylase proenzyme S-adenosylmethionine decarboxylase alpha chain S-adenosylmethionine decarboxylase beta chain |
RPR2 | 2_162859353 | 0.08939 | 2 | 162859353 | 5.34E-07 | 8.94 | Zm00001d005182 | GLM | Charged multivesicular body protein 2a |
RPR2 | 2_162876327 | 0.08909 | 2 | 162876327 | 2.48E-07 | 8.91 | Zm00001d005183 | GLM | Uncharacterized protein |
RPR3 | 2_162876327 | 0.09596 | 2 | 162876327 | 3.64E-07 | 9.60 | Zm00001d005183 | GLM | Uncharacterized protein |
DMC2 | 2_168529088 | 0.10684 | 2 | 168529088 | 6.57E-08 | 12.23 | Zm00001d005300,Zm00001d000967,Zm00001d005301 | GLM | MYB transcription factor, Transcription factor MYB44;NA;DNA binding |
DMC2 | 2_168529088 | 0.12234 | 2 | 168529088 | 7.07E-06 | 10.68 | Zm00001d005300, Zm00001d000967, Zm00001d005301 | MLM | MYB transcription factor, Transcription factor MYB44;NA;DNA binding |
DMC2 | 2_170637158 | 0.0983 | 2 | 170637158 | 1.85E-07 | 9.83 | Zm00001d005351 | GLM | Arogenate dehydratase, 4.2.1.91 |
DMC2 | 2_170637158 | 0.10648 | 2 | 170637158 | 1.18E-06 | 10.65 | Zm00001d005351 | MLM | Arogenate dehydratase, 4.2.1.91 |
RPR3 | 3_12279836 | 0.08754 | 3 | 12279836 | 7.85E-07 | 8.75 | Zm00001d039695 | GLM | S-adenosyl-L-methionine-dependent methyltransferase superfamily protein |
RPR2 | 3_50985869 | 0.08933 | 3 | 50985869 | 3.65E-06 | 9.44 | LOC109945001 | MLM | Unknow |
RPR2 | 3_50985869 | 0.09606 | 3 | 50985869 | 1.30E-08 | 8.93 | Zm00001d040577 | GLM | Uncharacterized protein |
RPR3 | 3_50985869 | 0.09437 | 3 | 50985869 | 2.01E-08 | 9.61 | Zm00001d040577 | GLM | Uncharacterized protein |
RPR2 | 3_119865757 | 0.07427 | 3 | 119865757 | 3.58E-07 | 7.43 | Zm00001d041441 | GLM | Unknow |
RPR3 | 3_175959350 | 0.08615 | 3 | 175959350 | 9.79E-07 | 8.62 | Zm00001d042665 | GLM | Transcription repressor MYB6 |
DMC3 | 3_204520247 | 0.11482 | 3 | 204520247 | 5.54E-08 | 11.48 | Zm00001d043592,Zm00001d043593 | GLM | SPA1-related 3;CESA4 (CELLULOSE SYNTHASE A4) |
DMC3 | 3_204520247 | 0.12685 | 3 | 204520247 | 4.34E-07 | 12.69 | Zm00001d043592,Zm00001d043593 | MLM | SPA1-related 3;CESA4 (CELLULOSE SYNTHASE A4) |
RPR1 | 4_178358908 | 0.10212 | 4 | 178358908 | 4.40E-08 | 10.21 | Zm00001d052068 | GLM | Pathogenesis-related protein-1-like |
SD3 | 4_201423345 | 0.08848 | 4 | 201423345 | 9.69E-06 | 8.85 | Zm00001d052804 | MLM | MYB transcription factor, Putative MYB DNA-binding domain superfamily protein |
DMC3 | 5_47711262 | 0.10724 | 5 | 47711262 | 2.20E-07 | 10.72 | Zm00001d014448 | GLM | Unknow |
DMC3 | 5_47711262 | 0.11216 | 5 | 47711262 | 1.81E-06 | 11.22 | Zm00001d014448 | MLM | Unknow |
DMC3 | 5_47716318 | 0.10094 | 5 | 47716318 | 6.60E-06 | 10.09 | Zm00001d014448 | MLM | Unknow |
DMC3 | 5_47744387 | 0.10115 | 5 | 47744387 | 7.54E-06 | 10.12 | Zm00001d014449 | MLM | Chromo domain-containing protein LHP1,Chromdomain-containing protein CRD101, Chromo domain-containing protein LHP1 |
DMC3 | 5_47750439 | 0.10293 | 5 | 47750439 | 6.37E-07 | 10.29 | Zm00001d014449 | GLM | Chromo domain-containing protein LHP1,Chromdomain-containing protein CRD101, Chromo domain-containing protein LHP1 |
DMC3 | 5_47750439 | 0.10845 | 5 | 47750439 | 2.95E-06 | 10.85 | Zm00001d014449 | MLM | Chromo domain-containing protein LHP1,Chromdomain-containing protein CRD101, Chromo domain-containing protein LHP1 |
DMC3 | 5_47752006 | 0.0995 | 5 | 47752006 | 1.17E-07 | 9.95 | Zm00001d014449 | GLM | Chromo domain-containing protein LHP1,Chromdomain-containing protein CRD101, Chromo domain-containing protein LHP1 |
DMC3 | 5_47752006 | 0.10413 | 5 | 47752006 | 7.82E-07 | 10.41 | Zm00001d014449 | MLM | Chromo domain-containing protein LHP1,Chromdomain-containing protein CRD101, Chromo domain-containing protein LHP1 |
SL3 | 5_160469150 | 0.09172 | 5 | 160469150 | 9.40E-07 | 9.17 | Zm00001d014451 | GLM | Glutamate receptor 3.4 |
SL3 | 5_160469150 | 0.09498 | 5 | 160469150 | 6.24E-06 | 9.50 | Zm00001d014451 | MLM | Glutamate receptor 3.4 |
RPR1 | 5_217360437 | 0.08571 | 5 | 217360437 | 4.47E-07 | 8.57 | Zm00001d018247 | GLM | Zinc finger protein |
RPR3 | 6_169956647 | 0.09647 | 6 | 169956647 | 3.69E-07 | 9.65 | Zm00001d039094 ;Zm00001d039095 | GLM | 3-ketoacyl-CoA synthase, 2.3.1.-;Uncharacterized protein |
SL2 | 10_70989765 | 0.14962 | 10 | 70989765 | 3.79E-06 | 14.96 | LOC103641209 | MLM | Unknow |
SL2 | 10_70989765 | 0.15028 | 10 | 70989765 | 8.78E-08 | 15.03 | LOC103641209 | GLM | Unknow |
SL2 | 10_117358884 | 0.10855 | 10 | 117358884 | 9.72E-07 | 10.86 | Zm00001d025403 | GLM | Unknow |