Table 1 General features of the V. necatrix genome
From: Functional annotation of a divergent genome using sequence and structure-based similarity
Haploid genome size (Mb) | 15.3 (H1), 15.1 (H2), 14.8 (H3), and 14.7Â Mb (H4), Average 14.97 |
Ploidy | Tetraploid |
Repeat content (%) | 50.0 |
GC content (%GC) | 28.3 |
Protein-coding genes | 2971 |
RNA-seq confirmed | 88.7%, or 2732/3080 genes |
Transposable elements | 109 |
Gene density (genes/kb) | 0.20 |
Mean coding length (bp) | 1081 |
Mean intergenic distance (bp) | 3606 |
Number of overlapping genes | 3 |
rDNA genes (16-23 S/5S) | 18 (hap1, 3) − 20 (hap2, 4) / 13 |
# of genes with signal peptide | 372 (128 also have a TM) |
# of genes with transmembrane domains | 382 (128 also have a SP) |
BUSCO scores of haplotypes | 95.9–96.5% |