Table 2 Recombination events with high significance as detected by RDP in L, M and S segments of TSWV
Recombination event | Sequences detected with recomb. event | Recombinant sequence1 | Recombination breakpoints without (with) gaps | Parental sequences | Detection Methods2 | P-value3 | |||
|---|---|---|---|---|---|---|---|---|---|
Isolate | Country | Begin | End | Major | Minor | ||||
L-RNA segment | |||||||||
1 | 1 | MK348942 | Italy | 8665 (10,084) | 8886 (10,348) | MK348943 | MH763623 | GB3 | 2.058 × 10− 16 |
2 | 1 | KP008132 | Spain | 8838 (10,284) | 8913 (10,374) | LC549179 | MK682812 | GB3 | 2.279 × 10− 09 |
M-RNA segment | |||||||||
1 | 1 | YNKM-2 | China | 3111 (3208) | 3811 (3908) | YNKMXD | YNHHKY | RGBMCS3 | 6.586 × 10− 18 |
S-RNA segment | |||||||||
1 | 1 | MG989675 | Italy | 0 (1) | 977 (980) | MH846122 | MG989676 | RGBMCS3 | 1.395 × 10− 07 |
2 | 2 | MG989674 | Italy | 879 (882) | 1973 (1880) | MG602673 | HM581936 | CS3 | 4.933 × 10− 03 |