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Table 3 Estimation of genetic diversity of the complete genomic segments; L, S, and M RNA of TSWV

From: Insights into the genetic variability and evolutionary dynamics of tomato spotted wilt orthotospovirus in China

TSWV

Population

TSWV segment

No. of sequences

No. of analyzed sites

S

h

Hd

Ï€

θw

Eta

Per site

Per sequence

China

L

23

8903

361

21

0.992

0.004

0.011

98.623

364

S

15

2905

224

15

1.000

0.014

0.024

70.120

228

M

21

4760

372

21

1.000

0.012

0.021

104.510

376

Global

L

14

10,370

1336

14

1.000

0.039

0.047

422.466

1402

S

8

2835

306

8

1.000

0.038

0.042

121.487

315

M

9

4755

613

9

1.000

0.042

0.048

232.168

631

  1. S: number of polymorphic (segregating) sites, h: number of haplotypes, Hd: haplotype (gene) diversity, π: nucleotide diversity (per site), Eta: total number of mutations, θw: Watterson’s theta