Table 2 Distribution of types of effects of the variants predicted by snpEff, a complete list is found in Table S1
Type | Count | Percent |
|---|---|---|
Disruptive inframe deletion | 1,340 | 0.00% |
Disruptive inframe insertion | 823 | 0.00% |
Exon loss variant | 8 | 0.00% |
Frameshift variant | 6,321 | 0.02% |
Missense variant | 128,377 | 0.36% |
Splice acceptor variant | 6,472 | 0.02% |
Splice donor variant | 4,356 | 0.01% |
Splice region variant | 34,945 | 0.10% |
Intron variant | 16,382,594 | 46.29% |
other | 18,828,998 | 53.20% |
Total | 35,394,234 | 100% |