Table 1 Statistics of genome assembly and annotation of the chromosome-scale genome
Item | Category | Number |
|---|---|---|
Sequencing data | PacBio CLR (Gb) | 118.07 |
| Â | Illumina short WGS (Gb) | 167.75 |
| Â | Hi-C (Gb) | 157.56 |
| Â | MGI RNA (Gb) | 16.52 |
Assembly | Estimated genome size (Gb) | 2.40–2.63 |
| Â | Assembled genome size (Gb) | 2.59 |
| Â | Contig number | 1472 |
| Â | Contig N50 (Mb) | 3.70 |
| Â | Scaffold number | 77 |
| Â | Scaffold N50 (Mb) | 106.66 |
| Â | Longest scaffold (Mb) | 179.09 |
Annotation | GC content (%) | 41.89 |
| Â | Repeat sequences (%) | 49.99 |
| Â | Number of protein-coding genes | 20,145 |
| Â | Number of functional annotated genes | 20,130 |
| Â | Average gene length (bp) | 46096.02 |
| Â | Average exon length (bp) | 179.63 |
| Â | Average intron length (bp) | 5454.91 |
| Â | Average exon per gene | 9.15 |