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Table 1 SpltNPV-C3 predicted open reading frames (ORFs) and homologous repeat regions (hrs)

From: Genome characteristics and the ODV proteome of a second distinct alphabaculovirus from Spodoptera litura

Predicted ORF

Name

Position

Length(aa)

Promoter

Homologous ORF#/amino acid identity(%)

AcMNPV

SpltNPV-G2

SeMNPV

SperNPV

1

polyhedrin

1 > 741

246

L

8/85

1/83

1/98

1/100

2

orf1629

816 < 2291

491

L

9/26

2/-

2/62

2/89

3

pk1

2293 > 3189

298

 

10/43

3/43

3/85

3/97

4

hoar

3231 < 5420

729

E

-

-

4/47

4/85

5

unknown

5808 > 6017

69

E

-

-

-

5/100

6

unknown

6388 > 7896

502

E

-

-

5/36

7/86

7

odv-e56

8131 > 9234

367

L

148/47

17/47

6/85

8/98

8

me53

9499 > 10,629

376

 

139/28

27/24

7/75

9/99

hr1

-

10,888–12,656

-

-

-

-

-

-

9

unknown

13,083 < 13,457

124

E

-

-

-

10/93

hr2

-

13,574–14,209

-

-

-

-

-

-

10

F protein

14,617 > 16,638

673

E,L

23/20

136/34

8/80

11/98

11

gp16

16,838 < 17,128

96

L

130/33

-

9/86

12/99

12

p24

17,157 < 17,846

229

L

129/37

116/43

10/78

13/99

13

unknown

17,933 > 18,265

110

L

-

-

11/72

14/98

14

lef-2

18,228 > 18,863

211

 

6/40

114/38

12/79

15/98

15

p38.7

18,914 < 20,017

367

 

13/30

128/30

13/75

16/97

16

lef-1

20,017 < 20,670

217

 

14/42

129/42

14/80

17/83

17

cath

20,767 < 21,780

337

L

127/53

54/52

16/88

19/90

18

chitinase

21,818 > 23,569

583

L

126/65

42/57

19/85

21/90

19

unknown

23,616 < 24,038

140

 

-

-

20/27

22/84

20

unknown

24,148 > 24,636

162

E

-

-

21/68

23/95

21

unknown

24,852 > 26,243

463

L

-

105/35

23/68,

24/96

22

gp37

26,334 > 27,146

270

L

64/56

32/53

25/88

25/99

23

ptp2

27,143 < 27,652

169

L

-

-

26/81

26/97

24

egt

27,757 > 29,316

519

E

15/48

121/49

27/88

27/97

25

unknown

29,443 > 29,952

169

E

-

-

28/79

28/99

26

unknown

30,127 > 30,297

56

 

-

-

-

-

27

unknown

30,599 > 30,838

79

 

-

-

-

-

28

unknown

30,965 > 31,159

64

E

-

-

28/85

-

29

unknown

31,186 > 31,821

211

L

17/

119/31

29/68

29/95

30

unknown

31,858 < 34,623

921

E

-

118/25

30/71

30/96

31

unknown

34,602 > 35,216

204

 

-

-

31/72

31/96

32

pkip

35,271 > 35,774

167

L

24/24

133/29

32/61

32/97

33

unknown

35,813 < 36,148

111

E

  

33/61

33/98

34

unknown

36,602 > 36,802

66

 

-

-

-

 

35

arif1

36,821 < 37,126

101

 

-

-

34/78

34/97

36

PIF-2

36,957 > 38,219

420

 

22/52

135/58

35/92

35/98

37

PIF-1

38,245 > 39,861

538

 

119/46

124/48

36/82

36/95

38

unknown

39,818 > 40,060

80

 

-

-

37/81

37/99

39

fgf

40,180 < 41,439

419

 

32/24

122/31

38/66

38/93

40

unknown

41,366 > 41,533

55

E

-

-

39/58

39/85

41

unknown

41,692 > 42,501

269

E

-

-

40/73

40/97

42

alk exo

42,513 < 43,736

407

L

133/37

109/42

41/70

41/96

hr3

-

43,742–44,612

-

-

-

-

-

-

43

unknown

44,614 < 44,952

112

E

19/25

112/30

42/75

42/99

44

unknown

44,951 > 46,105

384

E,L

18/24

113/33

43/84

43/97

45

unknown

46,170 < 46,562

130

 

-

-

44/81

44/99

46

rr2b

46,689 > 47,630

313

E,L

-

63/57

45/93

45/100

47

Calyx/pep

47,679 < 48,680

333

L

131/35

132/44

46/91

46/100

48

unknown

48,784 < 49,110

108

 

117/43

-

47/68

47/95

49

unknown

49,156 < 49,500

114

 

-

108/28

-

48/96

50

unknown

49,622 < 50,278

218

 

-

-

-

49/93

51

sod

50,455 < 50,910

151

L

31/68

30/68

48/93

50/99

52

unknown

50,996 > 51,442

148

E

-

-

49/36

51/32

53

PIF-3

51,464 > 52,105

213

 

115/44

107/51

50/84

52/98

54

unknown

52,102 > 52,545

147

 

-

-

51/73

53/97

55

unknown

52,610 > 54,115

501

 

-

102/22

52/74

54/99

56

unknown

54,166 > 54,840

224

L

106/63,

101/50

53/88

55/98

57

unknown

54,922 < 56,019

365

 

33/35

100/28

54/69

56/97

hr4

-

56,264–58,475

-

-

-

-

-

-

58

dUTPase

58,551 > 58,982

143

 

-

-

55/93

57/98

59

unknown

59,092 > 59,736

214

E,L

-

-

-

58/82

60

p13

59,685 > 60,605

306

L

99/54

-

56/89

59/97

61

odv-e66

60,698 > 62,749

683

E,L

46/31

98/41

57/57

60/97

62

unknown

62,746 < 63,087

113

L

108/41

97/45

58/85

61/99

63

odv-ec43

63,100 < 64,170

356

 

109/44

96/47

59/98

62/100

64

PIF-7

64,154 < 64,333

59

 

110/38

95/48

60/88

63/100

65

p87

64,330 < 66,045

571

E

104/22

94/33

61/66

64/97

66

p48

66,114 > 67,241

375

L

103/51

93/59

62/91

65/99

67

p12

67,231 > 67,530

99

L

102/28

92/33

63/78

66/99

68

p40

67,559 > 68,707

382

E,L

101/42

91/43

64/89

67/98

69

p6.9

68,771 > 69,013

80

L

100/58

90/56

65/83

68/96

70

lef-5

69,035 < 69,862

275

 

99/58

89/50

66/92

69/99

71

38 K

69,761 > 70,660

299

L

98/45

88/51

67/87

70/99

72

unknown

70,684 > 71,166

160

L

-

-

68/53

-

73

bro

71,073 < 72,182

369

 

Feb-40

30/31,

13/23

72/92

74

unknown

72,252 < 72,671

139

 

-

-

-

73/95

75

PIF-4

72,691 < 73,200

169

L

96/52

87/54

69/89

74/100

76

helicase

73,169 > 76,822

1217

L

95/41

86/42

70/85

75/99

77

odv-e25

76,926 < 77,576

216

L

94/46

85/60

71/41

76/99

78

p18

77,573 < 78,043

156

 

93/-

-

72/92

77/100

79

p33

78,049 > 78,807

252

E

92/53

83/51

73/96

78/99

hr5

-

78,945–79,333

-

-

-

-

-

-

80

lef-4

79,368 < 80,747

459

 

90/47

82/48

74/78

79/99

81

vp39

80,746 > 81,735

329

E,L

89/42

81/44

75/94

80/99

82

cg30

82,100 > 83,476

458

E

88/-

-

76/37

81/87

83

p95

83,695 < 86,157

820

L

83/40

79/34

77/77

82/96

84

tlp20

86,126 > 86,755

209

L

82/28

Feb-78

78/69

83/86

85

unknown

86,514 > 87,302

262

L

81/49

77/52

79/81

84/96

86

gp41

87,268 > 88,278

336

L

80/51

76/58

80/95

85/99

87

unknown

88,287 > 88,658

123

E,L

78/33

May-69

81/62

86/96

88

vlf1

88,660 > 89,781

373

E,L

77/66

74/62

82/98

87/99

89

cg30

90,501 > 90,803

100

 

-

-

76/25

-

90

unknown

91,116 > 91,814

232

 

-

-

hear52

-

91

p26

92,069 < 92,824

251

E

136/25

-

87/84

88/98

92

iap2

92,886 < 93,827

313

L

71/31

64/28

88/73

89/95

93

MTase

93,634 < 94,518

294

 

69/48

65/41

89/79

90/97

94

PIF-6

94,502 < 94,888

128

 

68/48

-

90/82

91/99

95

lef-3

94,887 > 96,062

391

L

67/28

67/28

91/64

92/94

96

desmo

96,043 < 98,277

744

 

66/22

68/24

92/68

93/96

97

DNA pol

98,276 > 101,440

1054

E

65/46

69/53

93/86

94/97

98

unknown

101,476 < 101,865

129

L

75/25

72/34

94/87

95/100

99

unknown

101,880 < 102,137

85

E,L

76/43

73/55

95/96

96/100

100

unknown

102,260 > 102,580

106

L

150/31

-

96/65

97/96

101

lef-9

102,667 < 104,157

496

 

62/63

59/69

97/95

98/98

102

fp25k

104,246 > 104,836

196

E,L

61/60

57/72

98/96

99/100

103

p94

105,059 > 107,248

729

L

134/23

-

99/66

100/51

104

chaB2

107,594 > 107,857

87

E,L

60/48

52/29

100/89

101/100

105

chaB1

107,871 > 108,455

194

L

59/52

52/37

101/60

102/93

106

unknown

108,448 < 108,993

181

 

57/39

51/31

102/76

103/99

107

unknown

109,143 < 109,463

106

 

56/-

-

103/73

104/95

108

unknown

109,360 > 109,575

71

 

-

-

-

-

109

unknown

109,381 < 109,584

67

L

55/38

50/40

104/91

105/98

110

vp1054

109,704 < 110,729

341

L

54/41

49/46

105/83

106/97

111

lef-10

110,590 < 110,817

75

L

53a/48

48/50

106/81

107/97

112

unknown

110,801 > 111,004

67

L

-

47/38

-

108/97

113

unknown

111,026 > 111,994

322

L

-

46/27

107/69

109/97

114

unknown

112,094 < 112,507

137

L

53/48

45/48

108/88

110/100

115

unknown

112,570 > 113,103

177

 

52/23

44/27

109/68

111/91

hr6

-

113,266–114,152

-

-

-

-

-

-

116

iap-3

114,369 > 115,241

290

L

27/30

-

110/69

113/95

117

bjdp

115,288 < 116,490

400

 

-

39/25

111/66

114/97

118

lef-8

116,409 > 119,180

923

 

50/61

38/62

112/89

115/98

119

unknown

119,313 < 119,480

55

L

43/44

-

113/78

116/98

120

odv-e66

119,515 < 121,581

688

E,L

46/26

98/29

114/77,

117/97

121

p47

121,634 > 122,851

405

 

40/54

36/57

115/89

118/99

122

unknown

122,942 > 123,577

211

E

-

-

116/32

119/90

123

unknown

123,649 > 124,230

193

E

-

-

117/66

120/94

124

ADPRase

124,307 > 125,053

248

E,L

38/62

35/52

118/95

121/99

125

lef-11

124,936 > 125,367

143

L

37/36

34/39

119/81

122/91

126

39 K

125,321 > 126,265

314

 

36/32

33/25

120/65

123/93

127

unknown

126,317 > 126,610

97

 

-

-

121/55

124/91

128

unknown

126,667 < 126,873

68

 

-

-

122/85

125/98

129

ubiquitin

126,877 < 127,113

78

L

35/-

32/91

123/94

126/99

130

unknown

127,180 > 127,776

198

L

34/38

18/55

124/79

127/96

hr7

-

127,816–130,509

-

-

-

-

-

-

131

unknown

130,536 < 130,931

131

L

26/35

31/39

125/73

128/96

132

dbp

131,040 > 132,008

322

 

25/28

30/27

126/74

129/85

133

lef-6

132,031 > 132,516

161

L

28/34

29/27

127/61

130/85

134

unknown

132,561 < 132,821

86

 

29/31

28/41

128/86

131/99

135

p26

133,058 > 133,861

267

L

136/35

-

129/84

132/99

136

p10

133,912 > 134,190

92

E,L

-

19/45

130/84

133/91

137

p74

134,271 < 136,220

649

E,L

138/54

21/51

131/87

134/99

138

unknown

136,326 > 136,592

88

E

-

-

-

135/99

139

unknown

136,794 > 137,213

139

E

-

-

20/32

136/100

140

bro

137,274 < 138,791

505

 

Feb-27

125/69

-

137/71

141

ie1

138,962 < 141,085

707

E

147/31

16/27

132/64

138/96

142

unknown

140,981 > 141,748

255

E,L

146/32

15/34

133/72

139/93

143

unknown

141,878 < 142,156

92

L

-

-

134/91

140/98

144

odv-ec27

142,162 < 143,004

280

L

144/55

13/50

135/96

141/99

145

odv-e18

143,088 < 143,333

81

 

143/51

Dec-59

136/93

142/100

146

p49

143,362 < 144,744

460

L

142/50

Nov-51

137/94

143/99

147

ie0

144,756 < 145,475

239

L

141/28

Aug-39

138/86

144/99

148

rr1

145,638 < 148,352

904

E,L

-

23/53

139/77

145/94

149

unknown

148,361 < 148,543

60

L

-

-

-

146/90

  1. Note: Putative SpltNPV-C3 predicted ORFs are listed in Column 1, and the gene homologs are listed in Column 2. Column 3 indicates the ORF location and transcriptional direction in the SpltNPV-C3 genome. Column 4 indicates the number of amino acids. Column 5 indicates the presence of early (E) and/or late (L) promoters located upstream of the start codon of each ORF. E indicates a TATA sequence followed by a CAGT or CATT mRNA start site sequence 20–40 nucleotides downstream, 180 bp upstream of the start codon. L indicates the presence of a (A/T/G) TAAG sequence. Columns 6–9 list the homologous ORF and percent amino acid identity from AcMNPV, SpltNPV-G2, SeMNPV (Spodoptera exigua multiple nucleopolyhedrovirus), and SperNPV (Spodoptera eridania nucleopolyhedrovirus), respectively