Table 1 Data quality control and sequence comparison analysis
From: Transcriptome analysis of long non-coding RNA and mRNA Profiles in VSV-infected BHK-21 Cells
Sample | Adapter (%) | LowQuality (%) | polyA (%) | N (%) | Filtering of clean reads (%) | BF_Q30 (%) | BF_GC (%) | rRNA Mapped_Reads (%) | rRNA Unmapped_Reads (%) | Total_Mapped (%) |
|---|---|---|---|---|---|---|---|---|---|---|
BVV-1 | 11,642 (0.11%) | 47,778 (0.45%) | 0 (0.00%) | 0 (0.00%) | 10,556,526 (99.44%) | 1,461,866,815 (91.80%) | 837,766,608 (52.61%) | 7312 (0.07%) | 10,549,214 (99.93%) | 5,454,910 (51.67%) |
BVV-2 | 11,406 (0.11%) | 54,702 (0.52%) | 0 (0.00%) | 520 (0.00%) | 10,423,434 (99.36%) | 1,434,020,347 (91.14%) | 831,891,697 (52.87%) | 7754 (0.07%) | 10,415,680 (99.93%) | 5,699,600 (54.68%) |
BVV-3 | 11,732 (0.10%) | 53,468 (0.47%) | 0 (0.00%) | 630 (0.01%) | 11,256,992 (99.42%) | 1,549,855,192 (91.25%) | 877,697,944 (51.68%) | 10,968 (0.10%) | 11,246,024 (99.90%) | 5,868,299 (52.13%) |
BVV-4 | 12,236 (0.11%) | 51,996 (0.46%) | 0 (0.00%) | 606 (0.01%) | 11,304,776 (99.43%) | 1,562,909,022 (91.64%) | 889,486,395 (52.16%) | 7118 (0.06%) | 11,297,658 (99.94%) | 5,949,614 (52.63%) |
Mock-1 | 16,876 (0.09%) | 89,846 (0.47%) | 0 (0.00%) | 640 (0.00%) | 18,834,154 (99.43%) | 2,621,870,692 (92.28%) | 1,535,555,933 (54.05%) | 11,472 (0.06%) | 18,822,682 (99.94%) | 13,438,746 (71.35%) |
Mock-2 | 12,760 (0.08%) | 99,900 (0.60%) | 0 (0.00%) | 610 (0.00%) | 16,629,940 (99.32%) | 2,302,391,724 (91.67%) | 1,356,380,040 (54.01%) | 12,570 (0.08%) | 16,617,370 (99.92%) | 12,082,627 (72.66%) |
Mock-3 | 13,418 (0.08%) | 97,384 (0.58%) | 0 (0.00%) | 544 (0.00%) | 16,683,394 (99.34%) | 2,315,473,276 (91.91%) | 1,346,251,150 (53.44%) | 12,700 (0.08%) | 16,670,694 (99.92%) | 12,245,847 (73.40%) |
Mock-4 | 16,150 (0.09%) | 103,964 (0.57%) | 0 (0.00%) | 628 (0.00%) | 18,117,724 (99.34%) | 2,487,859,109 (90.94%) | 1,458,325,799 (53.31%) | 13,330 (0.07%) | 18,104,394 (99.93%) | 13,172,252 (72.70%) |