Table 1 Basic characteristics of thirteen complete chloroplast genomes of the Costaceae family
Species | GenBank accession | Size (bp) | LSC (bp) | SSC (bp) | IR (bp) | GC content (%) | Number of genes (different) | Number of CDS (different) | Number of tRNA (different) | Number of rRNA (different) | Genes with introns | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Total | LSC | SSC | IR | CDS | |||||||||||
C. barbatus | OP712648 | 168,717 | 91,971 | 18,414 | 29,166 | 36.29 | 34.11 | 29.62 | 41.82 | 37.57 | 134 (111) | 88 (79) | 38 (28) | 8 (4) | 18 |
C. speciosus Guangdong | OP712649 | 167,174 | 91,239 | 19,971 | 27,982 | 36.33 | 34.28 | 29.15 | 42.23/ 42.24 | 37.61 | 134 (112) | 88 (79) | 38 (29) | 8 (4) | 18 |
C. tonkinensis Yunnan | OP712650 | 166,360 | 90,802 | 19,524 | 28,017 | 36.55 | 34.51 | 29.69 | 42.24/ 42.25 | 37.68 | 134 (112) | 88 (79) | 38 (29) | 8 (4) | 18 |
C. dubius | OP712651 | 168,573 | 91,938 | 18,363 | 29,136 | 36.30 | 34.13 | 29.63 | 41.83 | 37.58 | 134 (111) | 88 (79) | 38 (28) | 8 (4) | 18 |
C. speciosus var. marginatus | OP712652 | 167,185 | 91,236 | 19,953 | 27,998 | 36.33 | 34.28 | 29.17 | 42.22 | 37.63 | 134 (112) | 88 (79) | 38 (29) | 8 (4) | 18 |
C. beckii | OP712653 | 168,719 | 91,983 | 18,404 | 29,166 | 36.29 | 34.12 | 29.64 | 41.82 | 37.58 | 135 (111) | 88 (79) | 39 (28) | 8 (4) | 17 |
C. woodsonii | OP712654 | 168,551 | 91,861 | 18,420 | 29,135 | 36.30 | 34.15 | 29.55 | 41.83 | 37.58 | 134 (111) | 88 (79) | 38 (28) | 8 (4) | 18 |
M. uniflorus | OP712655 | 168,484 | 91,271 | 18,807 | 29,203 | 36.31 | 34.27 | 29.07 | 41.82/ 41.83 | 37.61 | 134 (112) | 88 (79) | 38 (29) | 8 (4) | 18 |
H. speciosa Guizhou | OK641589 | 167,158 | 91,239 | 19,955 | 27,982 | 36.33 | 34.28 | 29.17 | 42.23/ 42.24 | 37.60 | 134 (113) | 88 (79) | 38 (30) | 8 (4) | 18 |
C. viridis | MK262733 | 168,966 | 92,189 | 18,445 | 29,166 | 36.25 | 34.06 | 29.60 | 41.20 | 37.76 | 134 (111) | 88 (79) | 38 (28) | 8 (4) | 18 |
H. lacera | ON598391 | 168,053 | 91,955 | 20,124 | 27,987 | 36.16 | 34.03 | 29.00 | 42.23 | 37.70 | 134 (113) | 88 (79) | 38 (30) | 8 (4) | 18 |
H. speciosa Yunnan | ON598392 | 167,626 | 91,673 | 19,989 | 27,982 | 36.21 | 34.08 | 29.12 | 42.23 | 37.68 | 134 (113) | 88 (79) | 38 (30) | 8 (4) | 18 |
C. tonkinensis | ON598393 | 167,481 | 91,538 | 19,881 | 28,031 | 36.37 | 34.32 | 29.35 | 42.22 | 37.72 | 134 (113) | 88 (79) | 38 (30) | 8 (4) | 18 |