Table 4 The candidate genes with SNPs in the exon regions covered by the three candidate regions
Chromosome | Position (bp) | Gene ID | Annotation | Base variation | Location | Mutation type | Amino acid variation |
|---|---|---|---|---|---|---|---|
Arahy.08 | 31,209,749 − 31,222,270 | Arahy.R07MUD | Serine/threonine protein phosphatase family protein | CT-C | 3’ UTR | - | - |
Arahy.08 | 31,435,599 − 31,436,846 | Arahy.RPFA7S | allene oxide synthase | C-G | CDS | Synonymous mutation | P-P |
Arahy.13 | 126,948,863 − 126,951,270 | Arahy.246LCZ | Cytochrome P450 superfamily protein | A-ATCT | CDS | Codon mutation | -S |
Arahy.13 | 127,046,261 − 127,050,581 | Arahy.N0D15P | RING/FYVE/PHD zinc finger superfamily protein | TA-T | CDS | Frameshift mutation | - |
Arahy.13 | 127,447,669 − 127,458,789 | Arahy.K33YLS | aspartate aminotransferase | A-G | 3’ UTR | - | - |
Arahy.13 | 127,490,322 − 127,494,306 | Arahy.23HYFJ | myo-inositol-1-phosphate synthase 3 | C-T | CDS | Synonymous mutation | L-L |
Arahy.18 | 7,213,210-7,221,785 | Arahy.X1RCBJ | ubiquitin carboxyl-terminal hydrolase | G-A | CDS | Missense mutation | M-I |
Arahy.18 | 7,267,302-7,270,853 | Arahy.QT7BNH | FASCICLIN-like arabinogalactan protein 16 precursor | G-A | 3’ UTR | - | - |