Fig. 6

Differentially expressed genes (DEGs) in the “plant-pathogen interaction” KEGG pathway 04626 for (A) pecan (Carya illinoinensis) trees resistant to Venturia effusa (R) as opposed to susceptible non-diseased trees (S-ND) and (B) susceptible diseased leaves (S-D) compared to susceptible non-diseased (S-ND) leaves [48]. Significant DEGs have a Benjamini & Hochberg adjusted p-value < 0.05 and an absolute log2 fold change > 1.5. Genes in the figure with no expression information are not differentially expressed to a significant extent or C. illinoinensis DEGs have no Arabidopsis thaliana ortholog information. Pathway element in the figure shows expression pattern for each individual in the case group (R or S-D) compared to S-ND