Table 1 Information of RNA-Seq clean reads mapped with the ISO-Seq transcriptome
Sample | Total number of reads | Mapped reads (ratio) | Uniquely mapped reads (ratio) | Multi mapped reads (ratio) |
|---|---|---|---|---|
Rd-ck-1 | 27,219,928 | 22,753,138 (83.59%) | 7,959,107 (29.24%) | 14,794,031 (54.35%) |
Rd-ck-2 | 23,664,642 | 20,067,616 (84.80%) | 7,037,865 (29.74%) | 13,029,752 (55.06%) |
Rd-ck-3 | 38,676,635 | 32,716,566 (84.59%) | 11,552,711(29.87%) | 21,163,855 (54.72%) |
Rd-5-1 | 37,023,641 | 30,814,776 (83.23%) | 11,321,829 (30.58%) | 19,492,947 (52.64%) |
Rd-5-2 | 43,705,288 | 36,699,330 (83.97%) | 13,037,287 (29.83%) | 23,662,043 (54.15%) |
Rd-5-3 | 35,002,416 | 29,671,548 (84.77%) | 10,605,732 (30.30%) | 19,065,816 (54.47%) |
Rd-15-1 | 47,676,396 | 39,976,658 (83.85%) | 14,245,707 (29.88%) | 25,730,951 (53.97%) |
Rd-15-2 | 24,974,596 | 21,228,407 (85.00%) | 7,574,795 (30.33%) | 13,653,612 (54.67%) |
Rd-15-3 | 42,353,666 | 35,564,373 (83.97%) | 12,523,979 (29.57%) | 23,040,394 (54.40%) |
Rd-40-1 | 28,489,413 | 23,663,306 (83.06%) | 8,791,833 (30.86%) | 14,871,474 (52.20%) |
Rd-40-2 | 20,168,430 | 16,739,797 (83.00%) | 6,240,112 (30.94%) | 10,499,685 (52.06%) |
Rd-40-3 | 37,023,641 | 30,814,776 (83.23%) | 11,321,829 (30.58%) | 19,492,947 (52.64%) |