Table 3 ORF organization of contig C-1 from BaABYV-IR-1, including putative proteins and closely related strains
Predicted ORF/region | Gene products | Contigs | Length nt (aa) | Positions (nt) | identity% | ||
|---|---|---|---|---|---|---|---|
Start | Stop | nt | aa | ||||
5’UTR | - | 1 | 42 | 1 | 42 | - | - |
ORF 0 | P0 | 1 | 798 (265) | 43 | 840 | 80.10 (PuPV1) | 67.17 (PuPV) |
ORF 1 | P1 | 1 | 1878 (625) | 197 | 2074 | 87.33 (PABYV2-RSA1) | 81.76 (PABYV-RSA) |
ORF 1,2 | P1, P2 | 1 | 3140 (1046) | 197 | 3336 | 90.63 (PABYV-RSA) | 87.76 (PABYV-RSA) |
ORF 3a | p3a | 1 | 138 (45) | 3442 | 3579 | 97.10 (PABYV-RSA) | 100 YP_010087205 |
ORF 3 | P3 | 1 | 600 (199) | 3560 | 4159 | 97.83 (PABYV-RSA) | 96.98 (PuPV) |
ORF 3,5 | P3, p5 | 1 | 2076 (691) | 3560 | 5635 | 90.14 (PuPV) | 91.47 (PABYV-RSA) |
ORF 4 | P4 | 1 | 576 (191) | 3588 | 4163 | 97.92 (PuPV) | 95.29 (PuPV) |
3’UTR |  | 1 | 181 | 5636 | 5816 | - | - |