Table 4 Genomic regions and ORF structure of SqVYV-IR-BA, and its similarity to some GenBank isolates
Predicted ORF/region | Length nt(aa) | Position(nt) | Identity% | ||
|---|---|---|---|---|---|
Start | Stop | nt | aa | ||
5’ UTR | 117 | 1 | 117 | 94.69% ON229619.1 | - |
Polyprotein | 9,525 (3174) | 118 | 9642 | 98.45% ON229619.1 | 98.46% UQW19707.1 |
P1a | 1,617 (539) | 118 | 1734 | 94.64% ON229619.1 | 93.32% UQW19707.1 |
P1b | 9,63 (321) | 1735 | 2697 | 98.86% ON229619.1 | 99.38% UQW19707.1 |
P3 | 879 (293) | 2698 | 3576 | 99.54% ON229619.1 | 99.32% UQW19707.1 |
6k1 | 156 (52) | 3577 | 2732 | 100.00% ON013904.1 | 100.00% UQW19707.1 |
CI | 1,887 (629) | 3733 | 5619 | 99.26% ON229619.1 | 99.68% UQW19707.1 |
6k2 | 159 (53) | 5620 | 5778 | 98.74% ON229619.1 | 100.00% UQW19707.1 |
VPg | 576 (192) | 5779 | 6354 | 99.48% ON229619.1 | 92.71% YP_001788998.1 |
NIa | 699 (233) | 6355 | 7053 | 99.43% ON229619.1 | 97.42% YP_001788999.1 |
NIb | 1,512 (504) | 7054 | 8565 | 99.07% ON229619.1 | 99.21% UQW19707.1 |
CP | 1,074 (358) | 8566 | 9639 | 99.35% ON229619.1 | 99.44% UQW19707.1 |
PIPO | 237 (78) | 3093 | 3329 | 100.00% ON229619.1 | 91.03% YP_006405420.1 |
3UTR | 194 | 9643 | 9912 (9836) | 99.48% ON229619.1 | - |