Transcriptomic analysis of intestinal organoids, derived from pigs divergent in feed efficiency, and their response to Escherichia coli

Table 3 Number of observed differentially expressed genes (# DEG) for low FE colon and ileum organoids as a response to the E. coli challenge

Pathway	Low FE Colon		Low FE Ileum
Pathway	# DEG	FDR^a	# DEG	FDR^a
TNF signalling pathway (102)^a	30	7.24E⁻²⁴	32	1.4E⁻⁰⁸
IL17 signalling pathway (84)^a	19	5.39E⁻¹³	27	1.1E⁻⁰⁷
NF-kappa B signalling pathway (92)^a	22	1.74E⁻¹⁴	24	2.0E⁻⁰⁵
NOD-like receptor signalling pathway (138)^a	22	2.09E⁻¹⁰	34	1.6E⁻⁰⁶

^aNumber between brackets is number of total genes for each pathway and FDR False Discovery Rate. Pathways with indication of DEGs are shown in Additional files 7, 8, 9 and 10

ISSN: 1471-2164