Table 9 List of ten commonly identified genes between RNA-Seq and ChIP-Seq datasets in response to combined stresses (DT and DTHT) compared with control (Ctrl) in switchgrass
S.No | RNA-Seq DT Vs ChIP-Seq | Annotated Function | Gene Location |
|---|---|---|---|
1 | Pavir.1KG144100.v4.1 | Unknown | Chr01K:22691501–22694137 |
2 | Pavir.7KG075300.v4.1 | Putative Mg-protoporphyrin IX chelatase subunit CHLH | Chr09N: 82556622–82558235 |
3 | Pavir.8NG086600.v4.1 | rRNA N-glycosylase / rRNA N-glycosidase | Chr08N: 11955020–11971632 |
4 | Pavir.5KG302800.v4.1 | Unknown | Chr05K: 54419685–54421587 |
5 | Pavir.4KG101000.v4.1 | Unknown | Chr04K: 9854490–9864065 |
6 | Pavir.2KG178200.v4.1 | Receptor lectin kinase | Chr02K: 24333006–24334305 |
7 | Pavir.5KG302900.v4.1 | Chromosome condensation complex Condensin, subunit H | Chr05K: 54421971–54427469 |
8 | Pavir.J191800.v4.1 | Pectinacetylesterase family protein or Notum-related protein | Scaffold_1825: 10616–14690 |
9 | Pavir.8KG189000.v4.1 | NB-ARC domain-containing disease resistance protein or LRR containing protein | Chr08K: 31363953–31374075 |
10 | Pavir.2NG003200.v4.1 | Aldolase-type TIM barrel family protein or pyridoxal 5'-phosphate synthase pdxS subunit (pdxS, pdx1) | Chr02N: 356596–359236 |