Table 1 High impact variants found in alpaca suri
From: Whole genome sequencing analysis of alpaca suggests TRPV3 as a candidate gene for the suri phenotype
Locus | Chromosome | Alpaca huacaya, vicugna and guanaco genotype | Alpaca suri genotype | Genomic position of the variant in alpaca suri | Predicted phenotypic effect of the variant in suri | Effect T ype of the variant |
|---|---|---|---|---|---|---|
uncharacterized LOC116280269 | 4 | CA/CA | CA/C | c.717delA | p.Lys239fs | frameshift variant |
LOC102534084 (TRAV13-1) | 6 | A/A | A/T | c.2T > A | p.Met1? | start lost |
DNAJC22 | 12 | G/G | G/GT | c.72_73insA | p.Leu25fs | frameshift variant |
TRNAT-AGU_45 | 13 | C/C | C/CCCCG | c.60_63dupCCCG | p.Val22fs | frameshift variant |
TRPV3 | 16 | G/G | G/T | c.1423G > T | p.Glu475* | stop gained |
ARPC4 | 17 | G/G | G/A | c.301 C > T | p.Gln101* | stop gained |
HELZ2 | 19 | C/C | C/A | c.4320 C > A | p.Cys1440* | stop gained |
PLIN5 | 22 | G/G | G/GT | c.912dupT | p.Gly305fs | frameshift variant |