Table 3 WGS sample description
From: Whole genome sequencing analysis of alpaca suggests TRPV3 as a candidate gene for the suri phenotype
Species-Breed | Batch | SRA id | Sequence length | Coverage | Genotyping rate |
|---|---|---|---|---|---|
Alpaca - Suri (Dam) | Family 1; In house sample | - | 150 | 62 | 100 |
Alpaca - Huacaya (Sire) | Family 1; In house sample | - | 150 | 42 | 99.9 |
Alpaca - Suri (Offspring) | Family 1; In house sample | - | 150 | 50 | 99.9 |
Alpaca - Huacaya (Dam) | Family 2; In house sample | - | 150 | 37 | 99.9 |
Alpaca - Suri (Sire) | Family 2; In house sample | - | 150 | 51 | 99.8 |
Alpaca - Huacaya (Offspring) | Family 2; In house sample | - | 150 | 43 | 99.8 |
Guanaco | PRJNA612032 | SRR11905252 | 150 | 15 | 93.9 |
Guanaco | PRJNA612032 | SRR11905249 | 150 | 20 | 99.5 |
Guanaco | PRJNA612032 | SRR11905250 | 150 | 19 | 99.5 |
Guanaco | PRJNA612032 | SRR11905251 | 150 | 19 | 99.5 |
Guanaco | PRJNA612032 | SRR11905261 | 150 | 18 | 99.6 |
Guanaco | PRJNA612032 | SRR11905272 | 150 | 18 | 99.5 |
Vicugna | PRJNA612032 | SRR11905260 | 150 | 21 | 99.7 |
Vicugna | PRJNA612032 | SRR11905262 | 150 | 20 | 99.7 |
Vicugna | PRJNA612032 | SRR11905264 | 150 | 18 | 99.6 |
Vicugna | PRJNA612032 | SRR11905265 | 150 | 16 | 99.6 |
Vicugna | PRJNA612032 | SRR11905266 | 150 | 16 | 99.6 |
Vicugna | PRJNA612032 | SRR11905267 | 150 | 18 | 99.6 |