Table 1 Data source of the reference genomes and RNA-seq data
From: An insight into the gene expression evolution in Gossypium species based on the leaf transcriptomes
Group | Species | Genome version (Database) | RNA-seq data |
|---|---|---|---|
Tetraploid | AD2 | HAU_v2 (CottonGen) | SRR8089908; SRR8089972; SRR8089978 |
AD1 | NAU-NBI_v1.1 (CottonGen) | SRR8090032; SRR8090033; SRR8090035 | |
Diploid | A2 | WHU-updated v1 (CottonGen) | SRR13933601; RR13933602; SRR13933598 |
G2 | CRI_v1.1 (CottonGen) | SRR8694038; SRR8694039; SRR8694045 | |
D5 | BGI-CGP-draft_v1 (CottonGen) | SRR8267559-SRR8267561 | |
A1 | WHU_v1 (CottonGen) | SRR22211789-SRR22211791 | |
E1 | GCA_020496765.1 (NCBI) | SRR13933592-SRR13933594 | |
D1 | CRI_v1 (CottonGen) | SRR8267613-SRR8267615 | |
Outgroup | T. cacao | cocoa_v2 (MaGenDB) | SRR851884; SRR851885 |