Fig. 3

Bar plots showing the most enriched GO terms in the two cultivars after aphid infestation. Upregulated and downregulated DEGs in the two cultivars were analyzed by GO enrichment separately. RC, RT, SC, and ST are samples of one high resistance (R, Harmonie) and one highly susceptibility (S, Carefree Wonder) rose cultivar with (T) or without (C) aphid infestation. GO terms were subclassified into three categories distinguished by different colors: biological processes (BP), cellular components (CC), and molecular function (MF). Terms were primarily ranked by the number of genes participating in the relevant pathway. Values at the bottom of each bar represent the adjusted P-value (padj) attributed to the enrichment of the relevant pathway