Table 2 Alignment Rate comparison of two reference genomes
Sample | Total pairs | RchiOBHm-V2 | OBDH-1.0 | ||
|---|---|---|---|---|---|
Total unpaired reads | Overall alignment rate | Total unpaired reads | Overall alignment rate | ||
RC_1 | 22858915 | 8091862 | 87.07% | 7493628 | 87.91% |
RC_2 | 23637813 | 8529840 | 86.76% | 7910258 | 87.60% |
RC_3 | 20949180 | 7906024 | 86.01% | 7365110 | 86.84% |
RT_1 | 23829302 | 9391070 | 85.01% | 9117610 | 85.32% |
RT_2 | 23542911 | 9241142 | 85.78% | 9108868 | 85.92% |
RT_3 | 21001268 | 8398804 | 84.87% | 8065864 | 85.34% |
SC_1 | 22946976 | 9660454 | 84.96% | 8958872 | 86.01% |
SC_2 | 22972798 | 8730880 | 85.43% | 7956048 | 86.57% |
SC_3 | 22870614 | 9597474 | 85.12% | 8795614 | 86.34% |
ST_1 | 23790608 | 10315194 | 84.19% | 9412998 | 85.54% |
ST_2 | 23384605 | 9592846 | 84.96% | 8762290 | 86.22% |
ST_3 | 23196030 | 9943186 | 84.22% | 9074692 | 85.53% |