Table 3 Comparation of TEs in A. carmichaelii organelle genomes
Repeat Class | Plastome | Mitogenome | ||
|---|---|---|---|---|
Fragments | Lengths | Fragments | Lengths | |
Integrated Virus | 2 | 134 | 8 | 1152 |
Caulimoviridae | 2 | 134 | 8 | 1152 |
Multicopy gene | 9 | 536 | 12 | 736 |
tRNA | 9 | 536 | 12 | 736 |
Transposable Element | 155 | 16,440 | 256 | 26,083 |
DNA transposon | 98 | 10,948 | 91 | 7001 |
EnSpm/CACTA | 20 | 2081 | 15 | 1056 |
Harbinger | 4 | 601 | 4 | 243 |
Helitron | 28 | 3263 | 25 | 2236 |
Mariner/Tc1 | 1 | 77 | 1 | 79 |
MuDR | 26 | 3373 | 37 | 2783 |
hAT | 16 | 1290 | 8 | 464 |
LTR Retrotransposon | 48 | 4847 | 131 | 14,981 |
Copia | 31 | 3699 | 54 | 6350 |
Gypsy | 16 | 1050 | 75 | 8489 |
Non-LTR Retrotransposon | 8 | 598 | 34 | 4101 |
L1 | 7 | 529 | 32 | 3948 |
Penelope | \ | \ | 1 | 53 |
Naiad/Chlamys | \ | \ | 1 | 53 |
SINE | 1 | 69 | 1 | 100 |
SINE2/tRNA | 1 | 69 | \ | \ |
Total | 166 | 17,110 | 276 | 27,971 |
Ratio | / | 11.08% | / | 6.58% |