Table 2 Plastid gene types and functions in the tribe Ampelopsideae
Category | Gene group | Gene name |
|---|---|---|
Self-replication | Ribosomal RNA genes | rrn23, rrn16, rrn5, rrn4.5 |
Transfer RNA genes | trnA-UGC, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, trnG-UCC, trnG-GCC, trnH-GUG, trnI-CAU, trnI-GAU, trnK-UUU, trnL-CAA, trnL-UAA, trnL-UAG, trnM-CAU, trnN-GUU, trnP-UGG, trnQ-UUG, trnR-ACG, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC, trnV-UAC, trnW-CCA, trnY-GUA | |
Small subunit of ribosome | rps11, rps12, rps14, rps15, rps16, rps18, rps19, rps2, rps3, rps4, rps7,rps8, | |
Large subunit of ribosome | rpl14, rpl16, rpl2, rpl20, rpl22, rpl23,rpl32, rpl33, rpl36 | |
DNA-dependent RNA polymerase | rpoA, rpoB, rpoC1, rpoC2 | |
Translational initiation factor | infA | |
Genes for photosynthesis | Subunits of photosystem I | psaA, psaB, psaC, psaI, psaJ |
Subunits of photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbT, psbZ | |
Subunits of cytochrome | petA, petB, petD, petG, petL, petN | |
Subunits of ATP synthase | atpA, atpB, atpE, atpF, atpH, atpI | |
Large subunit of Rubisco | rbcL | |
Subunits of NADH dehydrogenase | ndhA, ndhB, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | |
Other genes | Maturase | matK |
Envelope membrane protein | cemA | |
Subunit of acetyl-CoA | accD | |
C-type cytochrome synthesis gene | ccsA | |
Protease | clpP1 | |
Component of TIC complex | ycf1 | |
Pseudogene | ψrps19, ψycf1, ψndhI |