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Table 1 KEGG pathways over-representation enrichment analysis of differentially expressed genes in pairwise comparison of Zagheh-11 vs. Malayer-21 using KOBAS online web server (http://kobas.cbi.pku.edu.cn)

From: RNA-seq analysis reveals narrow differential gene expression in MEP and MVA pathways responsible for phytochemical divergence in extreme genotypes of Thymus daenensis Celak

KEGG Maps

Number of background gene content

Number of reference genes covered by DE unigenes (orthologs)

Enrichment score

FDR value

Metabolic pathways

2246

281

0.13

1.33E-42

Biosynthesis of secondary metabolites

1107

149

0.13

1.71E-24

Terpenoid backbone biosynthesis

60

11

0.18

0.002

Monoterpenoid biosynthesis

8

8

1

1.82E-06

Flavonoid biosynthesis

22

9

0.41

5.33E-05

Carbon fixation in photosynthetic organs

69

39

0.57

3.40E-23

Carbon metabolism

273

67

0.25

1.32E-22

Photosynthesis

77

31

0.4

2.35E-15

Glyoxylate and dicarboxylate metabolism

78

29

0.37

1.00E-13

Glycolysis / Gluconeogenesis

116

26

0.22

2.37E-08

Biosynthesis of amino acids

251

37

0.15

2.62E-07

Plant-pathogen interaction

170

29

0.17

4.92E-07

Pentose phosphate pathway

58

16

0.28

1.90E-06

Fatty acid biosynthesis

43

11

0.26

0.0002

Cysteine and methionine metabolism

121

17

0.14

0.001

Isoquinoline alkaloid biosynthesis

22

7

0.32

0.001

Fatty acid metabolism

69

12

0.17

0.001

Phenylalanine metabolism

32

8

0.25

0.002

Fructose and mannose metabolism

64

11

0.17

0.0029

Glutathione metabolism

102

12

0.12

0.021

Stilbenoid, and gingerol biosynthesis

7

3

0.43

0.02

Carotenoid biosynthesis

29

5

0.17

0.05

Sulfur metabolism

42

6

0.14

0.05