High genetic diversity of the himalayan marmot relative to plague outbreaks in the Qinghai-Tibet Plateau, China

BMC Genomics

Table 1 Genetic diversity in 12 populations of M. himalayana in the Qinghai-Tibet Plateau

Loci	Primer	Marker	Primer Sequence (5’ → 3’)	Annealing Temperature (℃)	Allele size (bp)
B	AHTCA3F	FAM	TTTTTGGCTAACATAGTGGT	55	160
B	AHTCA3R	FAM	AGTGAAGGCTAAAGCAGAGT	55	160
C	AHTCA30F	HEX	GTCCAAAAAAAAAAGTAAGT	55	194
C	AHTCA30R	HEX	GAAGTAATTGAACCCATAAA	55	194
D	AHTCDA1F	FAM	ATGGGGACAAACATGGGACT	55	213
D	AHTCA1R	FAM	CGGTTGCTATGGAGACTGGA	55	213
E	AHTCT37F	FAM	CTTGTTCAGGATTTGGCTAT	56	232
E	AHTCT37R	FAM	AATGTCTTGAAAATGGTGTT	56	232
G	AHTCT6F	HEX	ATGGCAGAGAATATAAAATGG	55	171
G	AHTCT6R	HEX	CTGGTGGAACTTGTTAGGAG	55	171
H	AHTCA53F	HEX	GGAAGACCACAGAGGAACAG	56	235
H	AHTCA53R	HEX	CCTTGAAGAGCAAGAGCATA	56	235
I	AHTCT19F	ROX	TAATATCCCCCAAAGAAGTA	56	194
I	AHTCT19R	ROX	TAGACCTTGCTGTGAAAAAT	56	194
J	AHTCA90F	FAM	ATGGGACAGAACTCTTGATT	56	226
J	AHTCA90R	FAM	CCTTATAGTTTTACCTCCTCC	56	226
M	AHTCA49F	FAM	CATTGGAAGACAGAAAATACA	56	181
M	AHTCA49R	FAM	CAGTCCTTTGAAACTTGAGTA	56	181
R	BHTCT4F	HEX	ACAAAACTTCTTCGTCTC	55	196
R	BHTCT4R	HEX	GTCTTCCACTACTCCTCT	55	196
S	BHTCA50F	ROX	GTTGATATTCACATACGTTGTA	56	156
S	BHTCA50R	ROX	CTCACTTGGGATTTGCTT	56	156
T	CHTCA27F-1	ROX	AATAGCCAGTTCAACCTC	55	174
T	CHTCA27R	ROX	ATGCTAACTTCAGCAACA	55	174
W	CHTCA60F	ROX	TTTCCACAGCAGCACTCT	56	283
W	CHTCA60R	ROX	GGTTCCTTACCCAGACCA	56	283

ISSN: 1471-2164