High genetic diversity of the himalayan marmot relative to plague outbreaks in the Qinghai-Tibet Plateau, China

BMC Genomics

Table 2 Genetic diversity in 12 populations of M. himalayana in the Qinghai-Tibet Plateau

	N	Na	Ne	I	Ho	He	HWE	Fit	Fis
DQC	10	4.923	3.763	1.407	0.499	0.720	NS	0.308	0.059
AND	10	5.846	3.813	1.467	0.646	0.702	NS	0.062	0.454
GEM	23	7.077	4.016	1.535	0.699	0.707	NS	0.031	0.009
NQC	55	8.000	4.898	1.697	0.754	0.757	NS	0.011	0.539
XHC	60	8.769	4.865	1.750	0.773	0.776	NS	0.005	0.112
JZC	9	5.000	3.924	1.440	0.795	0.732	NS	-0.091	0.057
TRC	54	8.385	5.221	1.766	0.749	0.784	NS	0.052	0.454
ZKC	50	7.846	4.535	1.698	0.782	0.767	NS	-0.017	0.114
HZC	65	7.308	4.099	1.573	0.710	0.735	NS	0.035	0.107
WLC	113	8.231	4.598	1.675	0.745	0.763	NS	0.022	0.246
TJC	48	7.538	3.941	1.561	0.713	0.726	NS	0.018	0.106
QLC	6	3.769	3.093	1.167	0.808	0.637	NS	-0.247	0.040
Mean		6.891	4.231	1.561	0.723	0.734

Abbreviations: N effective number of samples, Na number of alleles per population, Ne effective allele, I Shannonʼs information index, Ho observed heterozygosity, He expected heterozygosity, HWE Hardy–Weinberg equilibrium test, NS means populations were in HWE, Fit Fixation Index, Fis inbreeding coefficient

ISSN: 1471-2164