Fig. 1

Repeat content and gene density distribution across major scaffolds (> 1Mb). Size of bar reflects the length of the scaffold (x-axis). Repeat density of dispersed repeats in bins of 100kb is represented as a heat map, ranging from white to black, the darker the color indicating higher repeat density. The height of each scaffold bar (y-axis) ranges from 0 to 200 genes/Mb with the average gene density of the scaffold plotted in orange. Gene density was calculated per 100kb and plotted along each scaffold in purple