Table 3 Detailed breakdown of the repeat population in the A. anomala genome. Repeat elements are classified by the name assigned by RepeatClassifier

Class I Elements

 LTRs

 Copia-like

104,635

183,550,845

53.587

 Gypsy-like

74,787

60,218,611

17.581

 Other

68,679

27,882,387

8.14

LINEs

 L3/CR1

59

19,678

0.006

 Tad1

4,623

5,848,916

1.708

 Other

89

47,022

0.014

 SINEs

136

370,136

0.108

Class II Elements

 Tc1-Mariner

47

6,543

0.002

 CMC-Enspm

549

129,709

0.038

 Helitron

3

3,705

0.001

Unclassified

51,711

28,213,842

8.237

Total Interspersed Repeats

305,318

306,291,394

89.42

Simple Repeats

19,952

937,149

0.27

Low-Complexity

1,402

77,435

0.02