Table 5 Calculated RIP-indices for the five repeat families with the largest copy number. A TpA/ApT index ≥ 0.89 and (CpT + TpG)/(ApC + GpT) index ≤ 1.03 indicate RIP activity. The numbers presented are the mean values calculated for a subset of 100 repeat family members
Repeat Family | Classification | Copy Number | Mean TpA/ApT | Mean (CpA + TpG)/ (ApC + GpT) |
|---|---|---|---|---|
rnd1_fam0 | LTR-Copia | 10,537 | 1.373688 | 0.6427065 |
rnd1_fam1 | LTR-unknown | 10,431 | 1.406927 | 0.644971 |
rnd1_fam2 | LTR-Copia | 8,315 | 1.658198 | 0.9923082 |
rnd1_fam3 | LTR-Copia | 7,814 | 1.306482 | 1.016627 |
rnd1_fam4 | LTR-Copia | 7,444 | 1.539685 | 0.944061 |