Table 1 Sample statistics from Cell Ranger, and after quality control and filtering. UMI = unique molecular identifier. Values represent the average value or the sum of values (bold) of the replicates. Complete data per replicate including accessions are provided in Supplementary Table S1
From: Intestinal cell diversity and treatment responses in a parasitic nematode at single cell resolution
Treatment cohort | Untreated | DMSO-treated | CID 1067700-treated | Leflunomide-treated |
|---|---|---|---|---|
Number of replicates | 3 | 2 | 2 | 2 |
Cell Ranger output | ||||
Estimated number of cells | 26,424 | 10,925 | 6,325 | 11,030 |
Number of reads (million) | 1,710.1 | 978 | 898 | 1,074 |
Mean reads per cell | 66,852 | 91,517 | 145,922 | 106,861 |
Median genes per cell | 391.7 | 690.5 | 879.5 | 562.5 |
Fraction of reads in cells | 39.9% | 30.8% | 37.3% | 40.5% |
Total genes detected | 14,024 | 13,832 | 13,501 | 13,686 |
Median UMI counts per cell | 2,516 | 3,883 | 6,449 | 3,908 |
Filtered statistics | ||||
Number of cells | 15,129 | 10,924 | 6,325 | 10,952 |
Mean UMIs per cell | 3,650 | 5,580 | 8,411 | 6,596 |
Median genes per cell | 495 | 971 | 1,197 | 952 |