Table 5 A table showing the highest-scoring SNP positions and their corresponding genes. SNP annotation is the functional implication and SNP impact is a classification of how a SNP might affect the function of the gene
SNP Position | Gene location | Gene | SNP Annotation | SNP impact | Gene BioType | Drug |
|---|---|---|---|---|---|---|
1,008,149 | 1,007,844–1,009,952 | rlmL | Synonymous | LOW | Protein coding | CIP |
2,189,699 | 2,188,430–2,190,910 | yehB | Synonymous | LOW | Protein coding | CIP |
4,040,529 | 4,040,517–4,040,636 | rrfA | Intragenic | MODIFIER | Protein coding | CIP |
1,324,783 | 1,324,746–1,326,641 | yciQ | Missense | MODERATE | Protein coding | CIP |
3,230,190 | 3,228,888–3,231,239 | ygjk | Missense | MODERATE | Protein coding | CIP |
2,313,886 | 2,313,488–2,316,160 | rcsD | Synonymous | LOW | Protein coding | AMP |
3,260,865 | 3,260,124–3,262,418 | tdcE | Synonymous | LOW | Protein coding | AMP |
3,591,222 | 3,591,009–3,592,325 | ugpB | Synonymous | LOW | Protein coding | AMP |
4,410,212 | 4,410,133–4,410,534 | yjfI | Missense | MODERATE | Protein coding | AMP |
2,824,686 | 2,824,491–2,825,576 | mltB | Synonymous | LOW | Protein coding | CTX |
1,427,523 | 1,427,389–1,427,598 | lomR | synonymous | LOW | Protein coding | CTX |
1,393,610 | 1,393,227–1,394,840 | mppA | Missense | MODERATE | Protein coding | CTX |
3,723,696 | 3,722,328–3,724,397 | glyS | Synonymous | LOW | Protein coding | CTX |