A chromosome-level genome assembly of the soybean pod borer: insights into larval transcriptional response to transgenic soybean expressing the pesticidal Cry1Ac protein

Table 1 Metrics for the Leguminivora glycinivorella genome assembly, ilLegGlyc1.1

Metric	ilLegGlyc1.x
Contig assembly: ilLegGlyc1.0
Total number	240
Length (bp)	657,403,812
N50 (Mb)	4,159,467
L50	49
N90 (bp)	1,616,361
L90	148
Largest contig (bp)	37,635,290
Scaffold assembly: ilLegGlyc1.1^a
Total number	40
Length (bp)	657,423,512
GC content (%)
Gaps	197
N bases (within gaps)	19,700
N50 (bp)	25,267,037
L50	11
N90 (bp)	15,140,355
L90	23
Largest scaffold (bp)	55.408,830
Gene Annotations^b
RefSeq gene models (total)	18,197
Protein-coding	15,681
Non-coding	2,382
Pseudogenes	134
lncRNAs	1,042
rRNAs	75
tRNAs	912
snRNAs, snoRNAs, misc_RNAs	473
RefSeq mRNA models (XM_)	23,735
Fully supported^c	21,155
RefSeq protein models (XP_)	23,735
Repeat content (masked sequence)	48.7%

^a Leguminivora glycinivorella WGS Project: JAKXMO01; GenBank assembly accession: GCA_023078275.1 (this assembly)
^bRefSeq assembly accession: GCF_023078275.1
^c100% of length with transcript evidence; 800 million reads (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Leguminivora_glycinivorella/100/#AlignmentStats)

ISSN: 1471-2164