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Table 4 Candidate proteins involved in Bacillus thuringiensis (Bt) insecticidal resistance and detoxification enzyme encoded by differentially-expressed genes (DEGs) between susceptible 2nd instar Leguminivora glycinivorella larvae fed on transgenic Cry1Ac Glycine max compared to unexposed cohorts

From: A chromosome-level genome assembly of the soybean pod borer: insights into larval transcriptional response to transgenic soybean expressing the pesticidal Cry1Ac protein

A) DEGs significant between treatments

 

Pfam

Putative

Log2

Locus

Identifier

GO ID (GO categories)

domains

RefSeq gene description

(FC)

LOC125238640

XP_48001964.1

GO:0008061 (MF); GO:0005576 (CC)

PF01607

peritrophin-1-like

 + 2.22

LOC125242528

XP_048007237.1

XP_048007238.1

GO:0008237 (MF); GO:0008270 (MF)

PF17900PF01433

PF11838

aminopeptidase N-like

 + 2.06

LOC125230228

XP_047991277.1

XP_047991276.1

GO:0016791 (MF)

PF00245

membrane-bound alkaline phosphatase-like

-2.09

B) DEGs significant between treatments and in significantly enrich GO terms

Pfam

Putative

 

Locus

Proteins(s)

GO ID (GO categories)

domains

RefSeq gene description

Reg

LOC125235293

XP_047997762.1

GO:0044437 (CC); GO:0021700 (BP)

PF00335

Tetraspanin

 + 1.68

LOC125229025

XP_047989739.1

Tetraspanin

 + 1.18

LOC125235440

XP_047997964.1

Tetraspanin

 + 1.14

LOC125236892

XP_047999767.1

Tetraspanin-12

-1.49

LOC125238198

XP_048001427.1

GO:0042579 (CC); GO:0008509 (MF); GO:0005342 (MF); GO:0016247 (MF); GO:0015238 (MF); GO:0005319 (MF); GO:0001101 (BP); GO:0006820 (BP); GO:0009410 (BP); GO:0015849 (BP); GO:0019748 (BP); GO:0021700 (BP); GO:0032787 (BP); GO:0032870 (BP); GO:0033993 (BP); GO:0055114 (BP); GO:1,901,701 (BP); GO:1,905,952 (BP)

PF00005

PF01061

ABC transporter

subfamily G (ABCG)

-1.50

LOC125240824

XP_048004907.1

PF00005

PF00664

ABC transporter

subfamily C4 (ABCC4)

-2.50

LOC125235547

XP_047995568.1

GO:0005506 (MF); GO:0016705 (MF); GO:0046906 (MF); GO:0006790 (BP); GO:0008610 (BP); GO:0009410 (BP); GO:0010817 (BP); GO:0017144 (BP); GO:0019216 (BP); GO:0019748 (BP); GO:0033993 (BP); GO:0046394 (BP); GO:0055114 (BP); GO:0062012 (BP); GO:1,901,615 (BP); GO:1,901,701 (BP); GO:1,905,952 (BP); GO:0032787 (BP)

PF00067

Cytochrome P450s

-1.16

LOC125228160

XP_047988575.1

-2.20

LOC125242592

XP_048007337.1

-2.33

LOC125238349

XP_048001606.1

-3.40

LOC125235906

XP_047998497.1

-3.93

  1. A) significantly DEGs between treatments, and B) DEGs annotated with Gene Ontology (GO) terms that were significantly enriched. Putative functional annotations provided for GO cellular component (CC), biological process (BP) and molecular function (MF) categories at GO level 2, with Pfam domain predictions and RefSeq gene descriptions indicated. Direction and magnitude of estimated Log2(fold-change) [Log2(FC)] among replicated treatment groups is shown for each significant DEG (false discovery rate ≤ 0.05)
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BMC Genomics

ISSN: 1471-2164

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