Skip to main content

Table 3 List of potential candidate genes identified in this study

From: Integrated meta-analysis and transcriptomics pinpoint genomic loci and novel candidate genes associated with submergence tolerance in rice

MQTL ID

Candidate genes

Functional description

Gene symbol

MQTL2.1

LOC_Os02g02400

catalase isozyme A

OsCatA

 

LOC_Os02g02780

protein kinase family protein

ACTPK1

 

LOC_Os02g03840

expressed protein

 
 

LOC_Os02g04130

DUF1645 domain-containing protein

OsSGL

 

LOC_Os02g05830

ribulose bisphosphate carboxylase small chain, chloroplast precursor

OsRBCS1

 

LOC_Os02g07680

cytochrome P450

 
 

LOC_Os02g08364

protein phosphatase 2 C

 
 

LOC_Os02g08440

WRKY71, expressed

OsWRKY71

 

LOC_Os02g03410

calcium/calmodulin-dependent protein kinases

OsCPK4

MQTL3.1

LOC_Os03g01320

LTPL116 - Protease inhibitor/seed storage

qLTG3-1

MQTL12.1

LOC_Os12g01370

fatty acid desaturase, putative, expressed

OsFAD3

 

LOC_Os12g02040

hypoxia-responsive family protein

 
 

LOC_Os12g02200

calcium/calmodulin depedent protein kinases

OsCIPK14

 

LOC_Os12g02290

LTPL23 - Protease inhibitor/seed storage

 
 

LOC_Os12g02310

LTPL11 - Protease inhibitor/seed storage

 
 

LOC_Os12g02320

LTPL12 - Protease inhibitor/seed storage

 
 

LOC_Os12g02370

chalcone–flavonone isomerase

OsCHIL2

 

LOC_Os12g05260

phytosulfokines precursor

 
 

LOC_Os12g05440

cytochrome P450

CYP94C2b

 

LOC_Os12g06220

harpin-induced protein 1 domain-containing protein

 
 

LOC_Os12g01140

ACG kinases include homologs to PKA, PKG and PKC

Â