Table 5 Comparison between allele specific methylation (ASM) analysis (column 5) using WGBS and percentage of significantly skewed variants in the validation cohort (column 4)
Sample | GW | NGS | NGS_skew_PCT | ASM_PCT |
|---|---|---|---|---|
Sample_1 | skewed | skewed | 73.04 | 40.29484029 |
Sample_2 | skewed | skewed | 22.49 | 29.29475588 |
Sample_3 | skewed | skewed | 46.31 | 38.02469136 |
Sample_5 | skewed | skewed | 40.8 | 33.16455696 |
Sample_7 | random | random | 2.35 | 0.829875519 |
Sample_8 | random | random | 8.2 | 4.781704782 |
Sample_9 | random | random | 2.94 | 5.527638191 |
Sample_11 | random | random | 2.6 | 2.017291066 |
Sample_10 | random | skewed | 18.3 | 7.973421927 |
Sample_14 | UI | skewed | 25.84 | 18.67088608 |